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Aliases for RBAKDN Gene

Subcategory (RNA class) for RBAKDN Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RBAKDN Gene

  • RBAK Downstream Neighbor (Non-Protein Coding) 2 3 5

External Ids for RBAKDN Gene

Summaries for RBAKDN Gene

GeneCards Summary for RBAKDN Gene

RBAKDN (RBAK Downstream Neighbor (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RBAKDN Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBAKDN Gene

Genomics for RBAKDN Gene

GeneHancer (GH) Regulatory Elements for RBAKDN Gene

Promoters and enhancers for RBAKDN Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I004741 Enhancer 1.4 Ensembl ENCODE dbSUPER 5.5 -326.2 -326167 8.5 HDGF FOXA2 MLX ARID4B SIN3A FEZF1 ZBTB7B YY1 FOS DEK AP5Z1 ZNF890P RBAKDN FOXK1 RADIL PIR62911 PIR42800
GH07I004765 Enhancer 0.6 ENCODE dbSUPER 5.9 -304.1 -304089 4.4 CTCF FEZF1 GC07P004766 PIR47511 PIR39599 PIR61632 FOXK1 AP5Z1 RBAKDN RADIL GC07P004765
GH07I005045 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.3 -26.0 -25961 1.8 HDGF ATF1 SMAD1 ARID4B SIN3A DMAP1 BRCA1 YY1 NCOA2 ETS1 RBAK RNF216P1 ANKRD61 AP5Z1 TNRC18 RNF216 RBAKDN RBAK-RBAKDN
GH07I005085 Enhancer 0.9 Ensembl ENCODE 0.4 +13.5 13542 0.4 CTCF RB1 MAX ZNF2 ZBTB7B RAD21 CC2D1A ZNF335 POLR2A ARID2 RADIL WIPI2 AP5Z1 RBAKDN OR10AH1P
GH07I005088 Enhancer 0.6 ENCODE 0.4 +16.6 16585 0.2 CTCF ZNF384 GABPA KAT8 GABPB1 IKZF1 ZNF143 ZBTB26 RADIL WIPI2 AP5Z1 RBAKDN OR10AH1P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RBAKDN on UCSC Golden Path with GeneCards custom track

Genomic Locations for RBAKDN Gene

Genomic Locations for RBAKDN Gene
chr7:5,072,060-5,073,223
(GRCh38/hg38)
Size:
1,164 bases
Orientation:
Plus strand
chr7:5,111,691-5,112,854
(GRCh37/hg19)

Genomic View for RBAKDN Gene

Genes around RBAKDN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBAKDN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBAKDN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBAKDN Gene

Proteins for RBAKDN Gene

  • Protein details for RBAKDN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NC62-RAKDN_HUMAN
    Recommended name:
    Putative RBAK downstream neighbor protein
    Protein Accession:
    A6NC62
    Secondary Accessions:
    • Q8N0T3

    Protein attributes for RBAKDN Gene

    Size:
    111 amino acids
    Molecular mass:
    12297 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RBAKDN Gene

Post-translational modifications for RBAKDN Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBAKDN Gene

Domains & Families for RBAKDN Gene

Protein Domains for RBAKDN Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RBAKDN: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBAKDN Gene

Function for RBAKDN Gene

Phenotypes for RBAKDN Gene

GenomeRNAi human phenotypes for RBAKDN:
genes like me logo Genes that share phenotypes with RBAKDN: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBAKDN Gene

Localization for RBAKDN Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RBAKDN Gene

Pathways & Interactions for RBAKDN Gene

SuperPathways for RBAKDN Gene

No Data Available

Interacting Proteins for RBAKDN Gene

Gene Ontology (GO) - Biological Process for RBAKDN Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RBAKDN Gene

Drugs & Compounds for RBAKDN Gene

No Compound Related Data Available

Transcripts for RBAKDN Gene

mRNA/cDNA for RBAKDN Gene

(1) REFSEQ mRNAs :
(329) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RBAKDN Gene

No ASD Table

Relevant External Links for RBAKDN Gene

GeneLoc Exon Structure for
RBAKDN
ECgene alternative splicing isoforms for
RBAKDN

Expression for RBAKDN Gene

NURSA nuclear receptor signaling pathways regulating expression of RBAKDN Gene:

RBAKDN
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RBAKDN Gene

Orthologs for RBAKDN Gene

Evolution for RBAKDN Gene

ENSEMBL:
Gene Tree for RBAKDN (if available)
TreeFam:
Gene Tree for RBAKDN (if available)

No data available for Orthologs for RBAKDN Gene

Paralogs for RBAKDN Gene

No data available for Paralogs for RBAKDN Gene

Variants for RBAKDN Gene

Sequence variations from dbSNP and Humsavar for RBAKDN Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1001053797 -- 5,071,354(+) A/G upstream_transcript_variant
rs1001623452 -- 5,072,749(+) C/A intron_variant
rs1004133434 -- 5,071,959(+) G/A/C upstream_transcript_variant
rs1005560359 -- 5,072,156(+) C/G non_coding_transcript_variant
rs1005861303 -- 5,073,142(+) G/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RBAKDN Gene

Variant ID Type Subtype PubMed ID
dgv3482n106 OTHER inversion 24896259
dgv6239n100 CNV gain 25217958
dgv6240n100 CNV gain 25217958
esv2667035 CNV deletion 23128226
nsv1019120 CNV loss 25217958
nsv436904 CNV insertion 17901297
nsv605981 CNV loss 21841781
nsv950800 CNV deletion 24416366

Additional Variant Information for RBAKDN Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBAKDN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBAKDN Gene

Disorders for RBAKDN Gene

Additional Disease Information for RBAKDN

No disorders were found for RBAKDN Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBAKDN Gene

Publications for RBAKDN Gene

  1. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 58
  2. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RBAKDN Gene

Sources for RBAKDN Gene

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