Aliases for RB1-DT Gene

Subcategory (RNA class) for RB1-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for RB1-DT Gene

  • RB1 Divergent Transcript 2 3 5
  • RB1-DT 2 5 165
  • Long Intergenic Non-Protein Coding RNA 441 2 3
  • NcRNA-RB1 2 3
  • NONHSAG013475.2 91
  • HSALNG0096978 164
  • LINC00441 3

External Ids for RB1-DT Gene

Previous HGNC Symbols for RB1-DT Gene

  • LINC00441

Summaries for RB1-DT Gene

GeneCards Summary for RB1-DT Gene

RB1-DT (RB1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RB1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RB1-DT Gene

Genomics for RB1-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RB1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J048302 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.5 -522 4 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 IKZF1 KDM1A ZNF692 POLR2A RB1 RB1-DT RCBTB2 lnc-LPAR6-4 LPAR6
GH13J048264 Enhancer 0.9 Ensembl ENCODE dbSUPER 13.9 +38.4 38401 4.6 POLR2A IKZF2 RELB RUNX3 IKZF1 SPI1 PAF1 TBX21 ATF2 SP7 RB1 RB1-DT ITM2B MED4 LINC00462 lnc-RB1-1 NONHSAG013474.2
GH13J048567 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.9 -266.3 -266259 5.9 SOX13 RCOR2 SP1 PKNOX1 CEBPA TCF7 FOXA2 YY1 ZKSCAN1 TEAD1 LOC105370201 lnc-RCBTB2-1 RB1 RCBTB2 LPAR6 RB1-DT FNDC3A LINC01077 MN297208 CYSLTR2
GH13J048652 Promoter/Enhancer 1.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.5 -350.5 -350526 2.7 RFX1 PRDM1 ZSCAN4 POLR2A BMI1 ZBTB48 SMARCA4 CYSLTR2 RB1-DT FNDC3A piR-33605-130
GH13J048650 Enhancer 0.6 Ensembl dbSUPER 4.5 -345.6 -345598 3.4 NFIC CTCF RAD21 FOS SMC3 LINC00462 RB1-DT CYSLTR2 HSALNG0097008 RCBTB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RB1-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RB1-DT Gene

Genomic Locations for RB1-DT Gene
chr13:48,286,978-48,303,702
(GRCh38/hg38)
Size:
16,725 bases
Orientation:
Minus strand
chr13:48,870,649-48,877,797
(GRCh37/hg19)
Size:
7,149 bases
Orientation:
Minus strand

Genomic View for RB1-DT Gene

Genes around RB1-DT on UCSC Golden Path with GeneCards custom track
RB1-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
RB1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RB1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RB1-DT Gene

Proteins for RB1-DT Gene

Post-translational modifications for RB1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for RB1-DT Gene

Domains & Families for RB1-DT Gene

Gene Families for RB1-DT Gene

genes like me logo Genes that share domains with RB1-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RB1-DT Gene

Function for RB1-DT Gene

Phenotypes From GWAS Catalog for RB1-DT Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RB1-DT Gene

Localization for RB1-DT Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RB1-DT gene
Compartment Confidence
nucleus 1
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RB1-DT Gene

Pathways & Interactions for RB1-DT Gene

PathCards logo

SuperPathways for RB1-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for RB1-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RB1-DT Gene

Drugs & Compounds for RB1-DT Gene

No Compound Related Data Available

Transcripts for RB1-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RB1-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000292B7A_9606 lncRNA 1143 4

Ensembl: ENST00000433480 (view in UCSC) ,

LncBook: HSALNT0201506,

LNCipedia: RB1-DT:21,

NONCODE: NONHSAT033704.2,

URS0000195173_9606 lncRNA 220 3

Ensembl: ENST00000436963 (view in UCSC) ,

LncBook: HSALNT0201513,

LNCipedia: RB1-DT:22,

URS0000E60ABC_9606 lncRNA 1184 2

HGNC: 42778,

RefSeq: NR_046414,

URS0000EF1EAD_9606 lncRNA 1660 1

Ensembl: ENST00000669900 (view in UCSC) ,

URS00008B3639_9606 lncRNA 1408 3

LncBook: HSALNT0201489,

LNCipedia: RB1-DT:23,

NONCODE: NONHSAT033702.2,

RB1-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RB1-DT Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RB1-DT Gene

No ASD Table

Relevant External Links for RB1-DT Gene

GeneLoc Exon Structure for
RB1-DT

Expression for RB1-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RB1-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RB1-DT Gene

Orthologs for RB1-DT Gene

Evolution for RB1-DT Gene

ENSEMBL:
Gene Tree for RB1-DT (if available)
TreeFam:
Gene Tree for RB1-DT (if available)

No data available for Orthologs for RB1-DT Gene

Paralogs for RB1-DT Gene

No data available for Paralogs for RB1-DT Gene

Variants for RB1-DT Gene

Additional dbSNP identifiers (rs#s) for RB1-DT Gene

Additional Variant Information for RB1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RB1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RB1-DT Gene

Disorders for RB1-DT Gene

No disorders were found for RB1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RB1-DT Gene

Publications for RB1-DT Gene

  1. A long non-coding RNA links calreticulin-mediated immunogenic cell removal to RB1 transcription. (PMID: 25579178) Musahl AS … Ørom UA (Oncogene 2015) 2 3
  2. Bidirectional transcription of Linc00441 and RB1 via H3K27 modification-dependent way promotes hepatocellular carcinoma. (PMID: 28300839) Tang J … Sun B (Cell death & disease 2017) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for RB1-DT Gene

Sources for RB1-DT Gene