Aliases for RASSF8-AS1 Gene

Data sources for RASSF8-AS1 Gene:

Subcategory (RNA class) for RASSF8-AS1 Gene

lncRNA

Aliases for RASSF8-AS1 Gene

External Ids for RASSF8-AS1 Gene

Previous GeneCards Identifiers for RASSF8-AS1 Gene

  • GC12M026092

Summaries for RASSF8-AS1 Gene

GeneCards Summary for RASSF8-AS1 Gene

RASSF8-AS1 (RASSF8 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RASSF8-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RASSF8-AS1 Gene

Genomics for RASSF8-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RASSF8-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RASSF8-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RASSF8-AS1 Gene

Latest Assembly
chr12:25,924,174-25,960,307
(GRCh38/hg38)
Size:
36,134 bases
Orientation:
Minus strand

Previous Assembly
chr12:26,107,587-26,112,375
(GRCh37/hg19 by Entrez Gene)
Size:
4,789 bases
Orientation:
Minus strand

chr12:26,092,262-26,112,698
(GRCh37/hg19 by Ensembl)
Size:
20,437 bases
Orientation:
Minus strand

Genomic View for RASSF8-AS1 Gene

Genes around RASSF8-AS1 on UCSC Golden Path with GeneCards custom track
RASSF8-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
RASSF8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RASSF8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RASSF8-AS1 Gene

Proteins for RASSF8-AS1 Gene

Post-translational modifications for RASSF8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RASSF8-AS1 Gene

Domains & Families for RASSF8-AS1 Gene

Gene Families for RASSF8-AS1 Gene

genes like me logo Genes that share domains with RASSF8-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RASSF8-AS1 Gene

Function for RASSF8-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RASSF8-AS1 Gene

Localization for RASSF8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RASSF8-AS1 Gene

Pathways & Interactions for RASSF8-AS1 Gene

PathCards logo

SuperPathways for RASSF8-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RASSF8-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RASSF8-AS1 Gene

Drugs & Compounds for RASSF8-AS1 Gene

No Compound Related Data Available

Transcripts for RASSF8-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RASSF8-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000144123_9606 lncRNA 2610 4

Ensembl: ENST00000500276 (view in UCSC) ,

LncBook: HSALNT0186864,

LNCipedia: RASSF8-AS1:8,

NONCODE: NONHSAT027367.2,

URS000025E8C4_9606 lncRNA 1121 4

Ensembl: ENST00000535436 (view in UCSC) ,

LncBook: HSALNT0186901, HSALNT0186902,

LNCipedia: RASSF8-AS1:1, RASSF8-AS1:25,

NONCODE: NONHSAT027380.2,

URS00005C15A8_9606 lncRNA 819 4

Ensembl: ENST00000542086 (view in UCSC) ,

LncBook: HSALNT0186900,

LNCipedia: RASSF8-AS1:6,

NONCODE: NONHSAT027379.2,

URS0000486CCA_9606 lncRNA 621 4

Ensembl: ENST00000502069 (view in UCSC) ,

LncBook: HSALNT0186887,

LNCipedia: RASSF8-AS1:4,

NONCODE: NONHSAT027375.2,

URS0000397DE8_9606 lncRNA 536 4

Ensembl: ENST00000545226 (view in UCSC) ,

LncBook: HSALNT0186890,

LNCipedia: RASSF8-AS1:7,

NONCODE: NONHSAT027376.2,

RASSF8-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RASSF8-AS1 Gene

8 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for RASSF8-AS1 Gene

No ASD Table

Relevant External Links for RASSF8-AS1 Gene

GeneLoc Exon Structure for
RASSF8-AS1

Expression for RASSF8-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RASSF8-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RASSF8-AS1

genes like me logo Genes that share expression patterns with RASSF8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RASSF8-AS1 Gene

Orthologs for RASSF8-AS1 Gene

Evolution for RASSF8-AS1 Gene

ENSEMBL:
Gene Tree for RASSF8-AS1 (if available)
TreeFam:
Gene Tree for RASSF8-AS1 (if available)

No data available for Orthologs for RASSF8-AS1 Gene

Paralogs for RASSF8-AS1 Gene

No data available for Paralogs for RASSF8-AS1 Gene

Variants for RASSF8-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for RASSF8-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for RASSF8-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv784n106 CNV deletion 24896259
esv26656 CNV gain+loss 19812545
esv2759886 CNV loss 17122850
nsv1069654 CNV deletion 25765185
nsv557802 CNV gain 21841781

Additional Variant Information for RASSF8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RASSF8-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for RASSF8-AS1 Gene

Disorders for RASSF8-AS1 Gene

Additional Disease Information for RASSF8-AS1

No disorders were found for RASSF8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RASSF8-AS1 Gene

Publications for RASSF8-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for RASSF8-AS1 Gene

Sources for RASSF8-AS1 Gene