RASSF10-DT Gene (RNA Gene)

RASSF10 Divergent Transcript

GC11M012999
GIFtS:
6
See more...

Aliases for RASSF10-DT Gene

Subcategory (RNA class) for RASSF10-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for RASSF10-DT Gene

  • RASSF10 Divergent Transcript 2 3 5
  • Long Intergenic Non-Protein Coding RNA 2738 2 3
  • RASSF10-DT 2 5
  • NONHSAG007696.2 91
  • HSALNG0082749 164
  • CTC-497E21.3 3
  • Lnc-BTBD10-2 165
  • LINC02738 3

External Ids for RASSF10-DT Gene

Previous HGNC Symbols for RASSF10-DT Gene

  • LINC02738

Summaries for RASSF10-DT Gene

GeneCards Summary for RASSF10-DT Gene

RASSF10-DT (RASSF10 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RASSF10-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RASSF10-DT Gene

Genomics for RASSF10-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RASSF10-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J013007 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 600.7 -1.1 -1146 6.5 CREB1 GATAD2A TEAD4 TFE3 SOX13 KDM1A RCOR2 BACH1 RELA ZIC2 RASSF10 RASSF10-DT LINC00958 ENSG00000252329 RF00994-166 ARNTL
GH11J013054 Enhancer 0.3 Ensembl 5.4 -45.4 -45441 0.8 FOSL2 RASSF10-DT RF00994-166 RASSF10 ENSG00000255558 ARNTL
GH11J012993 Enhancer 0.7 Ensembl 0.4 +15.2 15159 1.2 LEF1 DPF2 SOX6 TCF12 EP300 HMBOX1 CTBP1 HDAC2 NCOR1 ARNT LINC00958 RASSF10 RASSF10-DT TEAD1
GH11J013001 Enhancer 0.5 Ensembl 0.4 +8.8 8759 0.4 ZNF184 DPF2 NR2F1 ZFP64 CBFA2T3 IKZF2 RASSF10 RASSF10-DT LINC00958 TEAD1
GH11J012999 Enhancer 0.3 Ensembl 0.4 +9.8 9759 0.8 ATF2 JUND LINC00958 RASSF10 RASSF10-DT TEAD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RASSF10-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RASSF10-DT Gene

Genomic Locations for RASSF10-DT Gene
chr11:12,994,039-13,009,160
(GRCh38/hg38)
Size:
15,122 bases
Orientation:
Minus strand
chr11:13,022,637-13,030,706
(GRCh37/hg19)
Size:
8,070 bases
Orientation:
Minus strand

Genomic View for RASSF10-DT Gene

Genes around RASSF10-DT on UCSC Golden Path with GeneCards custom track
RASSF10-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
RASSF10-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RASSF10-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RASSF10-DT Gene

Proteins for RASSF10-DT Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RASSF10-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for RASSF10-DT Gene

Domains & Families for RASSF10-DT Gene

Gene Families for RASSF10-DT Gene

HGNC:
genes like me logo Genes that share domains with RASSF10-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RASSF10-DT Gene

Function for RASSF10-DT Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RASSF10-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RASSF10-DT Gene

Localization for RASSF10-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RASSF10-DT Gene

Pathways & Interactions for RASSF10-DT Gene

PathCards logo

SuperPathways for RASSF10-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for RASSF10-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RASSF10-DT Gene

Drugs & Compounds for RASSF10-DT Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RASSF10-DT Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RASSF10-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000020BD7_9606 lncRNA 670 4

HGNC: 54255,

Ensembl: ENST00000533002 (view in UCSC) ,

LNCipedia: lnc-BTBD10-2:1,

NONCODE: NONHSAT018091.2,

URS00009AFFA5_9606 lncRNA 670 2

LncBook: HSALNT0172275,

NONCODE: NONHSAT160090.1,

URS0000D5B784_9606 lncRNA 5523 1

LNCipedia: lnc-BTBD10-2:5,

URS0000D5BD09_9606 lncRNA 652 1

LNCipedia: lnc-BTBD10-2:3,

URS0000D5A43A_9606 lncRNA 487 1

LNCipedia: lnc-BTBD10-2:4,

RASSF10-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RASSF10-DT Gene

No ASD Table

Relevant External Links for RASSF10-DT Gene

GeneLoc Exon Structure for
RASSF10-DT

No data available for mRNA/cDNA for RASSF10-DT Gene

Expression for RASSF10-DT Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RASSF10-DT Gene

Orthologs for RASSF10-DT Gene

Evolution for RASSF10-DT Gene

ENSEMBL:
Gene Tree for RASSF10-DT (if available)
TreeFam:
Gene Tree for RASSF10-DT (if available)

No data available for Orthologs for RASSF10-DT Gene

Paralogs for RASSF10-DT Gene

No data available for Paralogs for RASSF10-DT Gene

Variants for RASSF10-DT Gene

Additional dbSNP identifiers (rs#s) for RASSF10-DT Gene

Additional Variant Information for RASSF10-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RASSF10-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RASSF10-DT Gene

Disorders for RASSF10-DT Gene

Additional Disease Information for RASSF10-DT

Open Targets Platform

No disorders were found for RASSF10-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RASSF10-DT Gene

Publications for RASSF10-DT Gene

No publications were found for RASSF10-DT Gene.

No data available for Mastermind for RASSF10-DT Gene

Products for RASSF10-DT Gene

Sources for RASSF10-DT Gene