Aliases for RASAL2-AS1 Gene

Subcategory (RNA class) for RASAL2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for RASAL2-AS1 Gene

  • RASAL2 Antisense RNA 1 2 3 5
  • RASAL2-AS1 2 5 165
  • RASAL2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG003563.2 91
  • HSALNG0008683 164

External Ids for RASAL2-AS1 Gene

Summaries for RASAL2-AS1 Gene

GeneCards Summary for RASAL2-AS1 Gene

RASAL2-AS1 (RASAL2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RASAL2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RASAL2-AS1 Gene

Genomics for RASAL2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RASAL2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J178092 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 607.1 -0.8 -831 5.6 CREB1 PRDM10 ZNF629 REST RFX1 LEF1 IKZF1 CTCF ZNF692 JUND RASAL2-AS1 RASAL2 ANGPTL1 lnc-SEC16B-6 CLEC20A
GH01J178124 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 21.5 -33.1 -33063 4.5 ZNF629 TFE3 IRF2 CEBPA KMT2B SOX13 CEBPB ETS1 SP1 SMARCC1 LOC105371630 RASAL2-AS1 RASAL2 piR-33905-005 CLEC20A
GH01J178188 Enhancer 0.9 FANTOM5 Ensembl 18.9 -95.0 -95008 3.2 GATAD2A CTCF TEAD4 FOXA1 RAD21 TRIM22 FOXA2 SMC3 TEAD1 JUNB RASAL2-AS1 RASAL2 CRYZL2P-SEC16B SEC16B ENSG00000270575 lnc-SEC16B-7 lnc-SEC16B-4 CLEC20A
GH01J178055 Enhancer 0.9 ENCODE 17.7 +36.8 36838 3.9 HNRNPL GATAD2A CTCF FOXA1 RXRB RAD21 IRF2 REST IKZF2 SP1 RASAL2 RASAL2-AS1 SEC16B CRYZL2P piR-53338-012 CRYZL2P-SEC16B HSALNG0008680
GH01J178155 Enhancer 0.8 Ensembl ENCODE dbSUPER 19.1 -62.3 -62253 2.9 TFAP4 ZNF362 ZNF384 SP7 RASAL2-AS1 RASAL2 lnc-SEC16B-4 ENSG00000270575 lnc-SEC16B-7 CLEC20A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RASAL2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RASAL2-AS1 Gene

Genomic Locations for RASAL2-AS1 Gene
chr1:178,086,557-178,093,993
(GRCh38/hg38)
Size:
7,437 bases
Orientation:
Minus strand
chr1:178,060,643-178,063,128
(GRCh37/hg19)
Size:
2,486 bases
Orientation:
Minus strand

Genomic View for RASAL2-AS1 Gene

Genes around RASAL2-AS1 on UCSC Golden Path with GeneCards custom track
RASAL2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
RASAL2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RASAL2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RASAL2-AS1 Gene

Proteins for RASAL2-AS1 Gene

Post-translational modifications for RASAL2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RASAL2-AS1 Gene

Domains & Families for RASAL2-AS1 Gene

Gene Families for RASAL2-AS1 Gene

genes like me logo Genes that share domains with RASAL2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RASAL2-AS1 Gene

Function for RASAL2-AS1 Gene

Phenotypes From GWAS Catalog for RASAL2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RASAL2-AS1 Gene

Localization for RASAL2-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RASAL2-AS1 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RASAL2-AS1 Gene

Pathways & Interactions for RASAL2-AS1 Gene

PathCards logo

SuperPathways for RASAL2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RASAL2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RASAL2-AS1 Gene

Drugs & Compounds for RASAL2-AS1 Gene

No Compound Related Data Available

Transcripts for RASAL2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RASAL2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001F68EE_9606 lncRNA 1971 4

Ensembl: ENST00000419458 (view in UCSC) ,

LncBook: HSALNT0018032,

LNCipedia: RASAL2-AS1:3,

NONCODE: NONHSAT007813.2,

URS000025BEA5_9606 lncRNA 300 4

Ensembl: ENST00000452867 (view in UCSC) ,

LncBook: HSALNT0018034,

LNCipedia: RASAL2-AS1:4,

NONCODE: NONHSAT007814.2,

URS000044B558_9606 lncRNA 2329 3

Ensembl: ENST00000421505 (view in UCSC) ,

LncBook: HSALNT0018030,

LNCipedia: RASAL2-AS1:2,

URS000075D7C2_9606 lncRNA 2338 2

HGNC: 44170,

RefSeq: NR_027982,

URS0000EEF1D7_9606 lncRNA 2831 1

Ensembl: ENST00000654141 (view in UCSC) ,

RASAL2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RASAL2-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for RASAL2-AS1 Gene

No ASD Table

Relevant External Links for RASAL2-AS1 Gene

GeneLoc Exon Structure for
RASAL2-AS1

Expression for RASAL2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RASAL2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RASAL2-AS1

SOURCE GeneReport for Unigene cluster for RASAL2-AS1 Gene:

Hs.736117
genes like me logo Genes that share expression patterns with RASAL2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RASAL2-AS1 Gene

Orthologs for RASAL2-AS1 Gene

Evolution for RASAL2-AS1 Gene

ENSEMBL:
Gene Tree for RASAL2-AS1 (if available)
TreeFam:
Gene Tree for RASAL2-AS1 (if available)

No data available for Orthologs for RASAL2-AS1 Gene

Paralogs for RASAL2-AS1 Gene

No data available for Paralogs for RASAL2-AS1 Gene

Variants for RASAL2-AS1 Gene

Additional dbSNP identifiers (rs#s) for RASAL2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for RASAL2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv548252 CNV gain 21841781

Additional Variant Information for RASAL2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RASAL2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for RASAL2-AS1 Gene

Disorders for RASAL2-AS1 Gene

No disorders were found for RASAL2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RASAL2-AS1 Gene

Publications for RASAL2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for RASAL2-AS1 Gene

Sources for RASAL2-AS1 Gene