Aliases for RARA-AS1 Gene

Subcategory (RNA class) for RARA-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for RARA-AS1 Gene

  • RARA Antisense RNA 1 2 3 5
  • RARA-AS1 2 168
  • CTD-2267D19.2 3
  • NONHSAG021742 92
  • HSALNG0116345 167

External Ids for RARA-AS1 Gene

Previous GeneCards Identifiers for RARA-AS1 Gene

  • GC17M038501

Summaries for RARA-AS1 Gene

GeneCards Summary for RARA-AS1 Gene

RARA-AS1 (RARA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RARA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RARA-AS1 Gene

Genomics for RARA-AS1 Gene

GeneHancer (GH) Regulatory Elements for RARA-AS1 Gene

Promoters and enhancers for RARA-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RARA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RARA-AS1 Gene

Genomic Locations for RARA-AS1 Gene
chr17:40,340,867-40,343,279
(GRCh38/hg38)
Size:
2,413 bases
Orientation:
Minus strand
chr17:38,497,119-38,499,388
(GRCh37/hg19)
Size:
2,270 bases
Orientation:
Minus strand

Genomic View for RARA-AS1 Gene

Genes around RARA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RARA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RARA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RARA-AS1 Gene

Proteins for RARA-AS1 Gene

Post-translational modifications for RARA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RARA-AS1 Gene

Domains & Families for RARA-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RARA-AS1 Gene

Function for RARA-AS1 Gene

Phenotypes From GWAS Catalog for RARA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RARA-AS1 Gene

Localization for RARA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RARA-AS1 Gene

Pathways & Interactions for RARA-AS1 Gene

PathCards logo

SuperPathways for RARA-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RARA-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RARA-AS1 Gene

Drugs & Compounds for RARA-AS1 Gene

No Compound Related Data Available

Transcripts for RARA-AS1 Gene

mRNA/cDNA for RARA-AS1 Gene

5 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RARA-AS1 Gene

No ASD Table

Relevant External Links for RARA-AS1 Gene

GeneLoc Exon Structure for
RARA-AS1

Expression for RARA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RARA-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RARA-AS1 Gene

This gene is overexpressed in Whole Blood (x10.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RARA-AS1

genes like me logo Genes that share expression patterns with RARA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RARA-AS1 Gene

Orthologs for RARA-AS1 Gene

Evolution for RARA-AS1 Gene

ENSEMBL:
Gene Tree for RARA-AS1 (if available)
TreeFam:
Gene Tree for RARA-AS1 (if available)

No data available for Orthologs for RARA-AS1 Gene

Paralogs for RARA-AS1 Gene

No data available for Paralogs for RARA-AS1 Gene

Variants for RARA-AS1 Gene

Additional dbSNP identifiers (rs#s) for RARA-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for RARA-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1146669 OTHER inversion 26484159
nsv833445 CNV loss 17160897

Additional Variant Information for RARA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RARA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for RARA-AS1 Gene

Disorders for RARA-AS1 Gene

Additional Disease Information for RARA-AS1

No disorders were found for RARA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RARA-AS1 Gene

Publications for RARA-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for RARA-AS1 Gene

Sources for RARA-AS1 Gene