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Aliases for RAP1BL Gene

Aliases for RAP1BL Gene

  • RAP1B, Member Of RAS Oncogene Family Pseudogene 3
  • Ras-Related Protein Rap-1b-Like Protein 3
  • Rap1B-Retro 3
  • HCG1757335 3
  • AC113404.3 5

External Ids for RAP1BL Gene

Previous GeneCards Identifiers for RAP1BL Gene

  • GC05M075465

Summaries for RAP1BL Gene

GeneCards Summary for RAP1BL Gene

RAP1BL (RAP1B, Member Of RAS Oncogene Family Pseudogene) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include GTP binding.

Additional gene information for RAP1BL Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAP1BL Gene

Genomics for RAP1BL Gene

GeneHancer (GH) Regulatory Elements for RAP1BL Gene

Promoters and enhancers for RAP1BL Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I076174 Enhancer 1.1 Ensembl ENCODE 550.8 -1.4 -1427 1.9 PKNOX1 ATF1 IRF4 TCF12 GATA2 ZNF143 ATF7 RUNX3 NCOA1 ZNF592 RAP1BL SV2C LOC105379041 LOC100132039 SAP18P1 GC05M076242
GH05I076175 Promoter 0.5 Ensembl 550.8 +0.1 53 0.2 RAP1BL ENSG00000251668 SV2C
GH05I075335 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.8 +835.4 835414 7.8 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARNT ARID4B SIN3A FEZF1 HMGCR POC5 RAP1BL RPS26P26 ANKDD1B GCNT4 POLK ENSG00000247372 GC05P075337 ENSG00000271815
GH05I076180 Enhancer 1 Ensembl ENCODE 0.4 -7.0 -7047 1.9 HDAC1 PKNOX1 ATF1 SIN3A BATF IRF4 ZBTB40 ZNF766 GATA2 ETV6 LOC105379041 SV2C LOC100132039 SAP18P1 RAP1BL GC05M076242
GH05I076198 Enhancer 0.5 ENCODE 0.3 -22.9 -22937 0.2 MEIS2 PKNOX1 TEAD4 TAL1 LOC105379041 SV2C LOC100132039 SAP18P1 RAP1BL GC05M076242
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAP1BL on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RAP1BL gene promoter:

Genomic Locations for RAP1BL Gene

Genomic Locations for RAP1BL Gene
chr5:76,170,085-76,174,354
(GRCh38/hg38)
Size:
4,270 bases
Orientation:
Minus strand
chr5:75,465,910-75,470,179
(GRCh37/hg19)

Genomic View for RAP1BL Gene

Genes around RAP1BL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAP1BL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAP1BL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAP1BL Gene

Proteins for RAP1BL Gene

Post-translational modifications for RAP1BL Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAP1BL Gene

Domains & Families for RAP1BL Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAP1BL Gene

Function for RAP1BL Gene

Phenotypes From GWAS Catalog for RAP1BL Gene

Gene Ontology (GO) - Molecular Function for RAP1BL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity IEA --
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with RAP1BL: view
genes like me logo Genes that share phenotypes with RAP1BL: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAP1BL Gene

Localization for RAP1BL Gene

Gene Ontology (GO) - Cellular Components for RAP1BL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol IEA --
GO:0005886 plasma membrane IEA --
genes like me logo Genes that share ontologies with RAP1BL: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RAP1BL Gene

Pathways & Interactions for RAP1BL Gene

SuperPathways for RAP1BL Gene

No Data Available

Interacting Proteins for RAP1BL Gene

Gene Ontology (GO) - Biological Process for RAP1BL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
genes like me logo Genes that share ontologies with RAP1BL: view

No data available for Pathways by source and SIGNOR curated interactions for RAP1BL Gene

Drugs & Compounds for RAP1BL Gene

No Compound Related Data Available

Transcripts for RAP1BL Gene

mRNA/cDNA for RAP1BL Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAP1BL Gene

No ASD Table

Relevant External Links for RAP1BL Gene

GeneLoc Exon Structure for
RAP1BL

Expression for RAP1BL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAP1BL Gene

genes like me logo Genes that share expression patterns with RAP1BL: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAP1BL Gene

Orthologs for RAP1BL Gene

Evolution for RAP1BL Gene

ENSEMBL:
Gene Tree for RAP1BL (if available)
TreeFam:
Gene Tree for RAP1BL (if available)

No data available for Orthologs for RAP1BL Gene

Paralogs for RAP1BL Gene

genes like me logo Genes that share paralogs with RAP1BL: view

No data available for Paralogs for RAP1BL Gene

Variants for RAP1BL Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RAP1BL Gene

Disorders for RAP1BL Gene

Additional Disease Information for RAP1BL

No disorders were found for RAP1BL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAP1BL Gene

Publications for RAP1BL Gene

  1. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 58
  3. The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability. (PMID: 23398456) Bett JS … Hay RT (The Biochemical journal 2013) 3 58
  4. Retrotransposition and mutation events yield Rap1 GTPases with differential signalling capacity. (PMID: 20170508) Zemojtel T … Zwartkruis FJ (BMC evolutionary biology 2010) 3 58
  5. HRap1B-retro: a novel human processed rap1B gene blurs the picture? (PMID: 16307016) Zemojtel T … Zwartkruis FJ (Leukemia 2006) 3 58

Products for RAP1BL Gene

Sources for RAP1BL Gene

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