RANP1 Gene (Pseudogene)

RAN Pseudogene 1

GC06P047279
GIFtS:
8
See more...

Aliases for RANP1 Gene

Aliases for RANP1 Gene

  • RAN Pseudogene 1 2 3 5
  • RAN, Member RAS Oncogene Family Pseudogene 1 2 3
  • Em:AB014080.2 2
  • Ras-Like 3
  • RANP1 5
  • TC4 3

External Ids for RANP1 Gene

Previous GeneCards Identifiers for RANP1 Gene

  • GC06P030514
  • GC06P030559
  • GC06P030561
  • GC06Pc30590
  • GC06P030453
  • GC06P030253
  • GC06P030486
  • GC06P032275
  • GC06P032448
  • GC06P032576
  • GC06P033235
  • GC06P030629
  • GC06P030651
  • GC06P030758
  • GC06P030895
  • GC06P031054
  • GC06P031202
  • GC06P031406
  • GC06P032049

Summaries for RANP1 Gene

GeneCards Summary for RANP1 Gene

RANP1 (RAN Pseudogene 1) is a Pseudogene.

Additional gene information for RANP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RANP1 Gene

Genomics for RANP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RANP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J030483 Enhancer 0.8 Ensembl ENCODE 600.7 -2.0 -1984 0.6 CTCF JUND PKNOX1 REST RAD21 SMC3 RFX5 ZNF335 ZNF654 NFATC3 RANP1 ZFP57 piR-56341-196 HLA-E RPP21
GH06J030486 Enhancer 0.4 FANTOM5 Ensembl 600.7 +0.3 349 0.3 RANP1 lnc-HLA-E-5 ABCF1 TUBB POLR1H HLA-E RPP21
GH06J030482 Enhancer 0.8 ENCODE 0.7 -3.7 -3656 0.2 CTCF ZNF692 JUND MTA2 ZNF143 REST RAD21 TRIM22 ZNF600 SP2 RANP1 piR-56341-196 HLA-E RPP21
GH06J030480 Enhancer 0.7 FANTOM5 ENCODE 0.4 -5.2 -5190 0.3 PRDM10 POLR2A EZH2 FOXK2 IKZF1 piR-56341-196 RANP1 HLA-E RPP21
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RANP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RANP1 Gene

Genomic Locations for RANP1 Gene
chr6:30,485,885-30,486,976
(GRCh38/hg38)
Size:
1,092 bases
Orientation:
Plus strand
chr6:30,453,662-30,454,724
(GRCh37/hg19)
Size:
1,063 bases
Orientation:
Plus strand

Genomic View for RANP1 Gene

Genes around RANP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RANP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RANP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

Proteins for RANP1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

No data available for DME Specific Peptides for RANP1 Gene

Domains & Families for RANP1 Gene

Suggested Antigen Peptide Sequences for RANP1 Gene

GenScript: Design optimal peptide antigens:
  • TC4 protein (Q96QB7_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RANP1 Gene

Function for RANP1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RANP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RANP1 Gene

Localization for RANP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RANP1 Gene

Pathways & Interactions for RANP1 Gene

PathCards logo

SuperPathways for RANP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RANP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RANP1 Gene

Drugs & Compounds for RANP1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RANP1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RANP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RANP1 Gene

No ASD Table

Relevant External Links for RANP1 Gene

GeneLoc Exon Structure for
RANP1

Expression for RANP1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RANP1 Gene

mRNA expression in normal human tissues for RANP1 Gene
mRNA expression by GTEx for RANP1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RANP1

genes like me logo Genes that share expression patterns with RANP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RANP1 Gene

Orthologs for RANP1 Gene

Evolution for RANP1 Gene

ENSEMBL:
Gene Tree for RANP1 (if available)
TreeFam:
Gene Tree for RANP1 (if available)

No data available for Orthologs for RANP1 Gene

Paralogs for RANP1 Gene

No data available for Paralogs for RANP1 Gene

Variants for RANP1 Gene

Additional Variant Information for RANP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RANP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RANP1 Gene

Disorders for RANP1 Gene

Additional Disease Information for RANP1

Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for RANP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RANP1 Gene

Publications for RANP1 Gene

  1. The C-terminal cytoplasmic tail of hedgehog receptor Patched1 is a platform for E3 ubiquitin ligase complexes. (PMID: 26885983) Yamaki Y … Kawahara H (Molecular and cellular biochemistry 2016) 3
  2. Quantitative Lys-ϵ-Gly-Gly (diGly) proteomics coupled with inducible RNAi reveals ubiquitin-mediated proteolysis of DNA damage-inducible transcript 4 (DDIT4) by the E3 ligase HUWE1. (PMID: 25147182) Thompson JW … Luchansky SJ (The Journal of biological chemistry 2014) 3
  3. New genetic associations detected in a host response study to hepatitis B vaccine. (PMID: 20237496) Davila S … Seielstad M (Genes and immunity 2010) 3
  4. Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity. (PMID: 16702430) Shiina T … Bahram S (Genetics 2006) 3
  5. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 3

ExternalLinks

View latest publications for RANP1 gene in Mastermind

Products for RANP1 Gene

Sources for RANP1 Gene