Aliases for RALGAPA1P1 Gene

Aliases for RALGAPA1P1 Gene

  • RALGAPA1 Pseudogene 1 2 3 5
  • Ral GTPase Activating Protein Catalytic Alpha Subunit 1 Pseudogene 1 2 3
  • GTPase Activating Rap/RanGAP Domain-Like 2 Pseudogene 2 3
  • GTPase Activating RANGAP Domain-Like 2 Pseudogene 2 3
  • Ral GTPase Activating Protein, Alpha Subunit 1 (Catalytic) Pseudogene 3
  • GTPase Activating RANGAP Domain-Like 2 2
  • DKFZp566D133 2
  • BA235C23.1 3
  • RALGAPA1P1 5
  • RALGAPA1P 3
  • GARNL2P 3
  • GARNL2 3

External Ids for RALGAPA1P1 Gene

Previous HGNC Symbols for RALGAPA1P1 Gene

  • GARNL2
  • GARNL2P
  • RALGAPA1P

Summaries for RALGAPA1P1 Gene

GeneCards Summary for RALGAPA1P1 Gene

RALGAPA1P1 (RALGAPA1 Pseudogene 1) is a Pseudogene.

Additional gene information for RALGAPA1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RALGAPA1P1 Gene

Genomics for RALGAPA1P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RALGAPA1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J105519 Promoter 0.3 Ensembl 600.7 +0.1 77 1 RALGAPA1P1 FKTN lnc-FKTN-1 FSD1L
GH09J105242 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 15.2 -274.9 -274930 5 BRCA1 SP1 HNRNPL GATAD2A CTCF PRDM10 ZNF629 TFE3 ZNF512 SIX5 SLC44A1 ENSG00000286536 LOC112268038 NONHSAG053105.2 lnc-ABCA1-8 FKTN RALGAPA1P1 FSD1L
GH09J105063 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 14.9 -455.0 -455017 3 GATAD2A PRDM10 REST TFE3 IKZF1 NFKBIZ RCOR2 ZHX2 ZNF143 RXRB ABCA1 RALGAPA1P1 FKTN CT70 FSD1L lnc-ABCA1-10 LOC105376197 RF00017-7783 MN298678-148 SLC44A1
GH09J104763 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 12.5 -755.4 -755423 2.4 FOXA1 RBFOX2 PATZ1 NR2C1 POLR2A SCRT2 KMT2B NONO KLF9 MGA NIPSNAP3B NIPSNAP3A RALGAPA1P1 FKTN lnc-NIPSNAP3B-2 ABCA1
GH09J105067 Enhancer 0.6 ENCODE dbSUPER 11.5 -451.8 -451793 1.1 ZNF112 HLF MAX FKTN RALGAPA1P1 SMC2-AS1 lnc-ABCA1-10 LOC105376197 RF00017-7783 MN298678-148 ABCA1 SLC44A1 ENSG00000286536
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RALGAPA1P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RALGAPA1P1 Gene

Genomic Locations for RALGAPA1P1 Gene
chr9:105,519,824-105,527,319
(GRCh38/hg38)
Size:
7,496 bases
Orientation:
Plus strand
chr9:108,282,409-108,289,987
(GRCh37/hg19)
Size:
7,579 bases
Orientation:
Plus strand

Genomic View for RALGAPA1P1 Gene

Genes around RALGAPA1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RALGAPA1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RALGAPA1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RALGAPA1P1 Gene

Proteins for RALGAPA1P1 Gene

Post-translational modifications for RALGAPA1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RALGAPA1P1 Gene

Domains & Families for RALGAPA1P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RALGAPA1P1 Gene

Function for RALGAPA1P1 Gene

Phenotypes From GWAS Catalog for RALGAPA1P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RALGAPA1P1 Gene

Localization for RALGAPA1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RALGAPA1P1 Gene

Pathways & Interactions for RALGAPA1P1 Gene

PathCards logo

SuperPathways for RALGAPA1P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RALGAPA1P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RALGAPA1P1 Gene

Drugs & Compounds for RALGAPA1P1 Gene

(1) Drugs for RALGAPA1P1 Gene - From: ApexBio

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
RBC8 Pharma 0

(1) ApexBio Compounds for RALGAPA1P1 Gene

Compound Action Cas Number
RBC8 361185-42-4
genes like me logo Genes that share compounds with RALGAPA1P1: view

Drug Products

Transcripts for RALGAPA1P1 Gene

mRNA/cDNA for RALGAPA1P1 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RALGAPA1P1 Gene

No ASD Table

Relevant External Links for RALGAPA1P1 Gene

GeneLoc Exon Structure for
RALGAPA1P1

Expression for RALGAPA1P1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RALGAPA1P1

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RALGAPA1P1 Gene

Orthologs for RALGAPA1P1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RALGAPA1P1 Gene

Organism Taxonomy Gene Similarity Type Details
Zebrafish
(Danio rerio)
Actinopterygii Dr.9241 30
Species where no ortholog for RALGAPA1P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RALGAPA1P1 Gene

ENSEMBL:
Gene Tree for RALGAPA1P1 (if available)
TreeFam:
Gene Tree for RALGAPA1P1 (if available)

Paralogs for RALGAPA1P1 Gene

No data available for Paralogs for RALGAPA1P1 Gene

Variants for RALGAPA1P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for RALGAPA1P1 Gene

Variant ID Type Subtype PubMed ID
esv3891705 CNV loss 25118596
nsv1053973 CNV loss 25217958
nsv615115 CNV loss 21841781
nsv982334 CNV duplication 23825009

Additional Variant Information for RALGAPA1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RALGAPA1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RALGAPA1P1 Gene

Disorders for RALGAPA1P1 Gene

Additional Disease Information for RALGAPA1P1

No disorders were found for RALGAPA1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RALGAPA1P1 Gene

Publications for RALGAPA1P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  2. Identification of a novel member of the snail/Gfi-1 repressor family, mlt 1, which is methylated and silenced in liver tumors of SV40 T antigen transgenic mice. (PMID: 11221845) Tateno M … Hayashizaki Y (Cancer research 2001) 2

Products for RALGAPA1P1 Gene

Sources for RALGAPA1P1 Gene