Aliases for RAI1-AS1 Gene

Subcategory (RNA class) for RAI1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for RAI1-AS1 Gene

  • RAI1 Antisense RNA 1 2 3 5
  • RAI1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • RAI1-AS1 2 170
  • NONHSAG021020 94

External Ids for RAI1-AS1 Gene

Previous GeneCards Identifiers for RAI1-AS1 Gene

  • GC17M017663

Summaries for RAI1-AS1 Gene

GeneCards Summary for RAI1-AS1 Gene

RAI1-AS1 (RAI1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RAI1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RAI1-AS1 Gene

Genomics for RAI1-AS1 Gene

GeneHancer (GH) Regulatory Elements for RAI1-AS1 Gene

Promoters and enhancers for RAI1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J017772 Enhancer 0.4 dbSUPER 750.6 -1.6 -1631 0.7 PRDM1 PRDM10 GLIS1 RAI1-AS1 ENSG00000264167 RAI1
GH17J017799 Enhancer 0.3 Ensembl 12.4 -29.1 -29124 0.6 ZFHX2 CTCF SMCR5 RAI1-AS1 RAI1 piR-32250 piR-35664
GH17J017800 Enhancer 0.2 dbSUPER 12.4 -30.4 -30383 1.8 SMCR5 RAI1-AS1 RAI1 piR-32250 piR-35664
GH17J017764 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 0.6 +2.9 2857 6.5 POLR2A GLIS2 CREB1 ZIC2 RXRA ZBTB8A ZNF629 PKNOX1 SCRT2 SCRT1 RAI1-AS1 piR-57460-286 RAI1
GH17J017773 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.6 -3.4 -3417 2 SIN3A CTCF RAD21 MAFK ZNF316 NFE2 FOS BCOR ZMYM3 KDM1A ENSG00000264167 RAI1-AS1 RAI1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RAI1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAI1-AS1 Gene

Genomic Locations for RAI1-AS1 Gene
chr17:17,759,154-17,770,821
(GRCh38/hg38)
Size:
11,668 bases
Orientation:
Minus strand
chr17:17,662,468-17,674,135
(GRCh37/hg19)
Size:
11,668 bases
Orientation:
Minus strand

Genomic View for RAI1-AS1 Gene

Genes around RAI1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAI1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAI1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAI1-AS1 Gene

Proteins for RAI1-AS1 Gene

Post-translational modifications for RAI1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAI1-AS1 Gene

Domains & Families for RAI1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RAI1-AS1 Gene

Function for RAI1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAI1-AS1 Gene

Localization for RAI1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAI1-AS1 Gene

Pathways & Interactions for RAI1-AS1 Gene

PathCards logo

SuperPathways for RAI1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RAI1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAI1-AS1 Gene

Drugs & Compounds for RAI1-AS1 Gene

No Compound Related Data Available

Transcripts for RAI1-AS1 Gene

mRNA/cDNA for RAI1-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) NONCODE transcripts :
(2) RNACentral transcripts :
(2) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAI1-AS1 Gene

No ASD Table

Relevant External Links for RAI1-AS1 Gene

GeneLoc Exon Structure for
RAI1-AS1
ECgene alternative splicing isoforms for
RAI1-AS1

Expression for RAI1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAI1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAI1-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x13.2).
genes like me logo Genes that share expression patterns with RAI1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAI1-AS1 Gene

Orthologs for RAI1-AS1 Gene

Evolution for RAI1-AS1 Gene

ENSEMBL:
Gene Tree for RAI1-AS1 (if available)
TreeFam:
Gene Tree for RAI1-AS1 (if available)

No data available for Orthologs for RAI1-AS1 Gene

Paralogs for RAI1-AS1 Gene

No data available for Paralogs for RAI1-AS1 Gene

Variants for RAI1-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAI1-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000147080 -- 17,764,748(-) G/C intron_variant
rs1000633513 -- 17,764,905(-) A/G intron_variant
rs1000644264 -- 17,759,714(-) T/G intron_variant
rs1000763872 -- 17,766,093(-) C/T non_coding_transcript_variant
rs1000933340 -- 17,758,732(-) A/T downstream_transcript_variant

Additional Variant Information for RAI1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAI1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RAI1-AS1 Gene

Disorders for RAI1-AS1 Gene

Additional Disease Information for RAI1-AS1

No disorders were found for RAI1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAI1-AS1 Gene

Publications for RAI1-AS1 Gene

No publications were found for RAI1-AS1 Gene.

No data available for External Links for RAI1-AS1 Gene

Products for RAI1-AS1 Gene

Sources for RAI1-AS1 Gene