Aliases for RAI1-AS1 Gene

Data sources for RAI1-AS1 Gene:

Subcategory (RNA class) for RAI1-AS1 Gene

lncRNA

Aliases for RAI1-AS1 Gene

External Ids for RAI1-AS1 Gene

Previous GeneCards Identifiers for RAI1-AS1 Gene

  • GC17M017663

Summaries for RAI1-AS1 Gene

GeneCards Summary for RAI1-AS1 Gene

RAI1-AS1 (RAI1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RAI1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RAI1-AS1 Gene

Genomics for RAI1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RAI1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J017773 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 250.7 +0.3 295 2 CTCF ZNF316 RAD21 NFE2 ZFP36 ZMYM3 ZNF768 NFE2L2 MAFK FOS RAI1-AS1 HSALNG0114977 SREBF1 RAI1
GH17J017800 Enhancer 0.3 dbSUPER 12.4 -26.7 -26690 1.8 POLR2A CTCF SMCR5 RAI1-AS1 RAI1 HSALNG0114980 piR-32250 SREBF1
GH17J017748 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.3 +20.7 20678 10.3 ZSCAN16 ZBTB10 SP1 SIX5 NR2C1 SMAD5 ETS1 MBD2 ZNF217 POLR2A lnc-DRC3-3 piR-57460-286 ZNF286B RAI1 USP32P2 FAM106A LOC100419436 DRG2 SMCR8 MPRIP
GH17J017764 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 0.4 +6.6 6550 6.5 ZIC2 RXRA RBM22 SCRT1 ZNF664 GLIS1 GATA2 POLR2A ZNF16 CREB1 FOXO3B DRG2 MPRIP-AS1 HSALNG0114977 RAI1-AS1 SREBF1 RAI1
GH17J017772 Enhancer 0.5 dbSUPER 0.7 +2.1 2062 0.7 GLIS1 ZFP36 ZNF768 PRDM10 PRDM1 RAI1-AS1 HSALNG0114977 SREBF1 RAI1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RAI1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RAI1-AS1 Gene

Latest Assembly
chr17:17,758,673-17,774,514
(GRCh38/hg38)
Size:
15,842 bases
Orientation:
Minus strand

Previous Assembly
chr17:17,662,468-17,669,616
(GRCh37/hg19 by Entrez Gene)
Size:
7,149 bases
Orientation:
Minus strand

chr17:17,662,468-17,674,135
(GRCh37/hg19 by Ensembl)
Size:
11,668 bases
Orientation:
Minus strand

Genomic View for RAI1-AS1 Gene

Genes around RAI1-AS1 on UCSC Golden Path with GeneCards custom track
RAI1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
RAI1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAI1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAI1-AS1 Gene

Proteins for RAI1-AS1 Gene

Post-translational modifications for RAI1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAI1-AS1 Gene

Domains & Families for RAI1-AS1 Gene

Gene Families for RAI1-AS1 Gene

genes like me logo Genes that share domains with RAI1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RAI1-AS1 Gene

Function for RAI1-AS1 Gene

Phenotypes From GWAS Catalog for RAI1-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAI1-AS1 Gene

Localization for RAI1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAI1-AS1 Gene

Pathways & Interactions for RAI1-AS1 Gene

PathCards logo

SuperPathways for RAI1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RAI1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RAI1-AS1 Gene

Drugs & Compounds for RAI1-AS1 Gene

No Compound Related Data Available

Transcripts for RAI1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RAI1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000036978E_9606 lncRNA 724 3

Ensembl: ENST00000443696 (view in UCSC) ,

LNCipedia: RAI1-AS1:1,

NONCODE: NONHSAT146102.2,

URS000081211B_9606 lncRNA 720 2

RefSeq: NR_130894,

LNCipedia: RAI1-AS1:2,

URS0001BF3B60_9606 lncRNA 931 1

LncBook: HSALNT0238059,

RAI1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RAI1-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for RAI1-AS1 Gene

No ASD Table

Relevant External Links for RAI1-AS1 Gene

GeneLoc Exon Structure for
RAI1-AS1

Expression for RAI1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RAI1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAI1-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x13.2).
genes like me logo Genes that share expression patterns with RAI1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAI1-AS1 Gene

Orthologs for RAI1-AS1 Gene

Evolution for RAI1-AS1 Gene

ENSEMBL:
Gene Tree for RAI1-AS1 (if available)
TreeFam:
Gene Tree for RAI1-AS1 (if available)

No data available for Orthologs for RAI1-AS1 Gene

Paralogs for RAI1-AS1 Gene

No data available for Paralogs for RAI1-AS1 Gene

Variants for RAI1-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for RAI1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for RAI1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAI1-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RAI1-AS1 Gene

Disorders for RAI1-AS1 Gene

Additional Disease Information for RAI1-AS1

No disorders were found for RAI1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAI1-AS1 Gene

Publications for RAI1-AS1 Gene

No publications were found for RAI1-AS1 Gene.

No data available for Mastermind for RAI1-AS1 Gene

Products for RAI1-AS1 Gene

Sources for RAI1-AS1 Gene