Free for academic non-profit institutions. Other users need a Commercial license

RAF1P1 Gene(Pseudogene)

RAF1 Pseudogene 1

GCID:
GC04M010256
GIFtS:
11
Genes Participants
UDN Logo

Aliases for RAF1P1 Gene

Subcategory (RNA class) for RAF1P1 Gene

lncRNA

Aliases for RAF1P1 Gene

  • RAF1 Pseudogene 1 2 3 5
  • V-Raf-1 Murine Leukemia Viral Oncogene Homolog 1 Pseudogene 1 2

External Ids for RAF1P1 Gene

ORGUL Members for RAF1P1 Gene

Previous GeneCards Identifiers for RAF1P1 Gene

  • GC04U990044
  • GC04M009944
  • GC04M010007
  • GC04M009932

Summaries for RAF1P1 Gene

GeneCards Summary for RAF1P1 Gene

RAF1P1 (RAF1 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RAF1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAF1P1 Gene

Genomics for RAF1P1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RAF1P1 Gene

Promoters and enhancers for RAF1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04I010239 Enhancer 0.9 ENCODE 0.4 +16.2 16150 1.7 HDAC1 SMAD1 ATF1 TAF9B ARNT NFRKB ZBTB40 TCF12 ZNF766 GATA2 ENSG00000261490 ENSG00000271544 RAF1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAF1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAF1P1 Gene

Genomic Locations for RAF1P1 Gene
chr4:10,254,926-10,256,659
(GRCh38/hg38)
Size:
1,734 bases
Orientation:
Minus strand
chr4:10,256,550-10,258,283
(GRCh37/hg19)

Genomic View for RAF1P1 Gene

Genes around RAF1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAF1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAF1P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RAF1P1 Gene

Proteins for RAF1P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RAF1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAF1P1 Gene

Domains & Families for RAF1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAF1P1 Gene

Function for RAF1P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for RAF1P1 Gene

GENATLAS Biochemistry:
murine leukemia viral (v-raf-1) oncogene homolog 1,pseudogene 1

Phenotypes From GWAS Catalog for RAF1P1 Gene

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAF1P1 Gene

Localization for RAF1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAF1P1 Gene

Pathways & Interactions for RAF1P1 Gene

SuperPathways for RAF1P1 Gene

PathCards logo More details on SuperPathways for RAF1P1
No Data Available

Interacting Proteins for RAF1P1 Gene

Gene Ontology (GO) - Biological Process for RAF1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAF1P1 Gene

Drugs & Compounds for RAF1P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RAF1P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RAF1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAF1P1 Gene

No ASD Table

Relevant External Links for RAF1P1 Gene

GeneLoc Exon Structure for
RAF1P1
ECgene alternative splicing isoforms for
RAF1P1

Expression for RAF1P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAF1P1 Gene

mRNA expression in normal human tissues for RAF1P1 Gene
mRNA expression by GTEx for RAF1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RAF1P1 Gene:

RAF1P1
genes like me logo Genes that share expression patterns with RAF1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAF1P1 Gene

Orthologs for RAF1P1 Gene

Evolution for RAF1P1 Gene

ENSEMBL:
Gene Tree for RAF1P1 (if available)
TreeFam:
Gene Tree for RAF1P1 (if available)

No data available for Orthologs for RAF1P1 Gene

Paralogs for RAF1P1 Gene

No data available for Paralogs for RAF1P1 Gene

Variants for RAF1P1 Gene

Additional Variant Information for RAF1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAF1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RAF1P1 Gene

Disorders for RAF1P1 Gene

Additional Disease Information for RAF1P1

Genetic Association Database
(GAD)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for RAF1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAF1P1 Gene

Publications for RAF1P1 Gene

  1. Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits. (PMID: 21943158) Middelberg RP … Whitfield JB (BMC medical genetics 2011) 44 58
  2. Genome-wide association analysis of age at onset in schizophrenia in a European-American sample. (PMID: 21688384) Wang KS … Pan Y (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2011) 3 58
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 44 58
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58

Products for RAF1P1 Gene

Sources for RAF1P1 Gene

Content
Loading form....