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Aliases for RAET1K Gene

Aliases for RAET1K Gene

  • Retinoic Acid Early Transcript 1K Pseudogene 2 3 5

External Ids for RAET1K Gene

Previous GeneCards Identifiers for RAET1K Gene

  • GC06U900333
  • GC06M150363
  • GC06M150319

Summaries for RAET1K Gene

GeneCards Summary for RAET1K Gene

RAET1K (Retinoic Acid Early Transcript 1K Pseudogene) is a Pseudogene.

Additional gene information for RAET1K Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAET1K Gene

Genomics for RAET1K Gene

GeneHancer (GH) Regulatory Elements for RAET1K Gene

Promoters and enhancers for RAET1K Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I150004 Promoter/Enhancer 1.5 Ensembl ENCODE 550.8 +0.0 5 1.7 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 ZNF207 RAET1K LATS1 PPIL4 ENSG00000233330 RPS18P9 ULBP1 NUP43 KATNA1 GINM1 ENSG00000231760
GH06I149962 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 16.7 +41.0 40958 3.1 PKNOX1 ARNT SIN3A FEZF1 ZNF2 YY1 POLR2B ZNF213 ZNF302 ZNF548 ULBP1 LATS1 NUP43 PPIL4 KATNA1 RAET1K ENSG00000216906 ENSG00000233330 ULBP2 ENSG00000219298
GH06I149937 Enhancer 1 Ensembl ENCODE 9.2 +66.6 66615 1.4 SMAD1 ZFP64 BMI1 ZNF207 ATF7 ETV6 IKZF2 RUNX3 CBFB ZNF217 ULBP2 ULBP1 RAET1K LOC105378052
GH06I150007 Enhancer 0.8 ENCODE 0.8 -2.1 -2133 0.2 HDGF CTCF BATF ZNF2 ZFHX2 EGR1 SCRT2 ZNF143 ATF7 PRDM10 ULBP1 RAET1L RAET1K
GH06I150001 Enhancer 0.7 ENCODE 0.8 +3.7 3717 0.9 PKNOX1 ZSCAN4 BMI1 BATF IRF4 RELA ATF7 ETV6 BCLAF1 IKZF2 ENSG00000231760 ULBP1 RAET1K BTF3P10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAET1K on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RAET1K gene promoter:

Genomic Locations for RAET1K Gene

Genomic Locations for RAET1K Gene
7,139 bases
Minus strand

Genomic View for RAET1K Gene

Genes around RAET1K on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAET1K Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAET1K Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAET1K Gene

Proteins for RAET1K Gene

Post-translational modifications for RAET1K Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAET1K Gene

Domains & Families for RAET1K Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAET1K Gene

Function for RAET1K Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAET1K Gene

Localization for RAET1K Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAET1K Gene

Pathways & Interactions for RAET1K Gene

SuperPathways for RAET1K Gene

No Data Available

Interacting Proteins for RAET1K Gene

Gene Ontology (GO) - Biological Process for RAET1K Gene


No data available for Pathways by source and SIGNOR curated interactions for RAET1K Gene

Drugs & Compounds for RAET1K Gene

No Compound Related Data Available

Transcripts for RAET1K Gene

mRNA/cDNA for RAET1K Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAET1K Gene

Retinoic acid early transcript 1K pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAET1K Gene

No ASD Table

Relevant External Links for RAET1K Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RAET1K Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAET1K Gene

mRNA differential expression in normal tissues according to GTEx for RAET1K Gene

This gene is overexpressed in Testis (x20.1).

NURSA nuclear receptor signaling pathways regulating expression of RAET1K Gene:


SOURCE GeneReport for Unigene cluster for RAET1K Gene:

genes like me logo Genes that share expression patterns with RAET1K: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAET1K Gene

Orthologs for RAET1K Gene

Evolution for RAET1K Gene

Gene Tree for RAET1K (if available)
Gene Tree for RAET1K (if available)

No data available for Orthologs for RAET1K Gene

Paralogs for RAET1K Gene

No data available for Paralogs for RAET1K Gene

Variants for RAET1K Gene

Sequence variations from dbSNP and Humsavar for RAET1K Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000022695 -- 149,999,276(-) C/G intron_variant
rs1000467471 -- 150,004,998(-) T/G intron_variant
rs1000621898 -- 150,000,362(-) CT/ intron_variant
rs1000742154 -- 150,000,604(-) T/G intron_variant
rs1001339438 -- 150,001,563(-) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RAET1K Gene

Variant ID Type Subtype PubMed ID
esv2732866 CNV deletion 23290073
esv2732878 CNV deletion 23290073
esv3890963 CNV loss 25118596
esv7375 CNV loss 19470904
nsv1116475 OTHER inversion 24896259
nsv436711 OTHER inversion 17901297
nsv517022 CNV gain+loss 19592680
nsv970176 CNV duplication 23825009

Additional Variant Information for RAET1K Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAET1K Gene

Disorders for RAET1K Gene

Additional Disease Information for RAET1K

No disorders were found for RAET1K Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAET1K Gene

Publications for RAET1K Gene

  1. A cluster of ten novel MHC class I related genes on human chromosome 6q24.2-q25.3. (PMID: 11827464) Radosavljevic M … Bahram S (Genomics 2002) 2 3 58

Products for RAET1K Gene

Sources for RAET1K Gene

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