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Aliases for RAET1E-AS1 Gene

Subcategory (RNA class) for RAET1E-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAET1E-AS1 Gene

  • RAET1E Antisense RNA 1 2 3 5
  • RAET1G-AS1 3

External Ids for RAET1E-AS1 Gene

Previous GeneCards Identifiers for RAET1E-AS1 Gene

  • GC06P150205

Summaries for RAET1E-AS1 Gene

GeneCards Summary for RAET1E-AS1 Gene

RAET1E-AS1 (RAET1E Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RAET1E-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAET1E-AS1 Gene

Genomics for RAET1E-AS1 Gene

GeneHancer (GH) Regulatory Elements for RAET1E-AS1 Gene

Promoters and enhancers for RAET1E-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I149858 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.4 -1395 6.4 PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 LRP11 ENSG00000268592 RAET1E-AS1 ENSG00000216906 ENSG00000231760 RAET1E LATS1 NUP43 ULBP1 ENSG00000273132
GH06I149886 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.3 +25.7 25707 5.2 MEIS2 JUN ZSCAN4 MAX CEBPG ZIC2 RFX5 ZNF335 GATA3 RCOR1 RAET1E ENSG00000216906 ENSG00000231760 LRP11 LOC105378051 ENSG00000268592 RAET1E-AS1
GH06I149894 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.3 +33.1 33118 3.6 ELF3 FOXA2 ZSCAN4 RAD21 ZEB1 GTF3C2 RCOR1 ZNF548 FOS SP5 RAET1E ENSG00000216906 LATS1 NUP43 PPIL4 KATNA1 LRP11 LOC105378051 ENSG00000268592 RAET1E-AS1
GH06I149868 Enhancer 0.9 ENCODE 0.4 +5.2 5216 1 HDAC1 TAF9B ARNT DNMT3B CHAMP1 TCF12 FOS NFYC CEBPB ZEB2 LRP11 ENSG00000268592 RAET1E-AS1 CCT7P1 RAET1E
GH06I149879 Enhancer 0.3 FANTOM5 0.4 +16.3 16260 0.4 CCT7P1 ENSG00000231760 ENSG00000268592 LRP11 RAET1E RAET1E-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAET1E-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAET1E-AS1 Gene

Genomic Locations for RAET1E-AS1 Gene
chr6:149,863,498-149,919,508
(GRCh38/hg38)
Size:
56,011 bases
Orientation:
Plus strand
chr6:150,205,567-150,240,644
(GRCh37/hg19)

Genomic View for RAET1E-AS1 Gene

Genes around RAET1E-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAET1E-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAET1E-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAET1E-AS1 Gene

Proteins for RAET1E-AS1 Gene

Post-translational modifications for RAET1E-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAET1E-AS1 Gene

Domains & Families for RAET1E-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAET1E-AS1 Gene

Function for RAET1E-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAET1E-AS1 Gene

Localization for RAET1E-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAET1E-AS1 Gene

Pathways & Interactions for RAET1E-AS1 Gene

SuperPathways for RAET1E-AS1 Gene

No Data Available

Interacting Proteins for RAET1E-AS1 Gene

Gene Ontology (GO) - Biological Process for RAET1E-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAET1E-AS1 Gene

Drugs & Compounds for RAET1E-AS1 Gene

No Compound Related Data Available

Transcripts for RAET1E-AS1 Gene

mRNA/cDNA for RAET1E-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAET1E-AS1 Gene

No ASD Table

Relevant External Links for RAET1E-AS1 Gene

GeneLoc Exon Structure for
RAET1E-AS1
ECgene alternative splicing isoforms for
RAET1E-AS1

Expression for RAET1E-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAET1E-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RAET1E-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x9.3), Vagina (x7.7), Testis (x6.0), and Cervix - Ectocervix (x4.4).
genes like me logo Genes that share expression patterns with RAET1E-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAET1E-AS1 Gene

Orthologs for RAET1E-AS1 Gene

Evolution for RAET1E-AS1 Gene

ENSEMBL:
Gene Tree for RAET1E-AS1 (if available)
TreeFam:
Gene Tree for RAET1E-AS1 (if available)

No data available for Orthologs for RAET1E-AS1 Gene

Paralogs for RAET1E-AS1 Gene

No data available for Paralogs for RAET1E-AS1 Gene

Variants for RAET1E-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAET1E-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000129010 -- 149,885,163(+) T/G genic_upstream_transcript_variant, intron_variant
rs1000248833 -- 149,881,983(+) A/G genic_upstream_transcript_variant, intron_variant
rs1000286163 -- 149,862,231(+) A/T upstream_transcript_variant
rs1000287400 -- 149,918,792(+) G/A intron_variant
rs1000301076 -- 149,881,579(+) C/G genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RAET1E-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv970172 CNV duplication 23825009
nsv823860 CNV gain 20364138
nsv819758 CNV loss 19587683
nsv517022 CNV gain+loss 19592680
nsv473433 CNV novel sequence insertion 20440878
esv3890963 CNV loss 25118596

Additional Variant Information for RAET1E-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAET1E-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAET1E-AS1 Gene

Disorders for RAET1E-AS1 Gene

Additional Disease Information for RAET1E-AS1

No disorders were found for RAET1E-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAET1E-AS1 Gene

Publications for RAET1E-AS1 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RAET1E-AS1 Gene

Sources for RAET1E-AS1 Gene

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