Aliases for RAD51-AS1 Gene

Data sources for RAD51-AS1 Gene:

RNA type for RAD51-AS1 Gene

lncRNA

Aliases for RAD51-AS1 Gene

External Ids for RAD51-AS1 Gene

Previous GeneCards Identifiers for RAD51-AS1 Gene

  • GC15M040978

Summaries for RAD51-AS1 Gene

GeneCards Summary for RAD51-AS1 Gene

RAD51-AS1 (RAD51 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with RAD51-AS1 include Ovarian Epithelial Cancer.

Additional gene information for RAD51-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RAD51-AS1 Gene

Genomics for RAD51-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RAD51-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RAD51-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RAD51-AS1 Gene

Latest Assembly
chr15:40,685,615-40,695,109
(GRCh38/hg38)
Size:
9,495 bases
Orientation:
Minus strand

Previous Assembly
chr15:40,985,932-40,987,303
(GRCh37/hg19 by Entrez Gene)
Size:
1,372 bases
Orientation:
Minus strand

chr15:40,978,922-40,987,305
(GRCh37/hg19 by Ensembl)
Size:
8,384 bases
Orientation:
Minus strand

Genomic View for RAD51-AS1 Gene

Genes around RAD51-AS1 on UCSC Golden Path with GeneCards custom track
RAD51-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
RAD51-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAD51-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAD51-AS1 Gene

Proteins for RAD51-AS1 Gene

Post-translational modifications for RAD51-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAD51-AS1 Gene

Domains & Families for RAD51-AS1 Gene

Gene Families for RAD51-AS1 Gene

genes like me logo Genes that share domains with RAD51-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RAD51-AS1 Gene

Function for RAD51-AS1 Gene

Phenotypes From GWAS Catalog for RAD51-AS1 Gene

Phenotypes for RAD51-AS1 Gene

genes like me logo Genes that share phenotypes with RAD51-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAD51-AS1 Gene

Localization for RAD51-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RAD51-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAD51-AS1 Gene

Pathways & Interactions for RAD51-AS1 Gene

PathCards logo

SuperPathways for RAD51-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RAD51-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RAD51-AS1 Gene

Drugs & Compounds for RAD51-AS1 Gene

No Compound Related Data Available

Transcripts for RAD51-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RAD51-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008B6758_9606 lncRNA 721 4

Ensembl: ENST00000533146 (view in UCSC) ,

LncBook: HSALNT0219062,

LNCipedia: RAD51-AS1:12, RAD51-AS1:5,

NONCODE: NONHSAT041866.2,

URS000075BE45_9606 lncRNA 1158 2

RefSeq: NR_040058,

LNCipedia: RAD51-AS1:13,

URS0000EEB84F_9606 lncRNA 1962 1

Ensembl: ENST00000526635 (view in UCSC) ,

URS0000DBA59A_9606 lncRNA 1242 1

Ensembl: ENST00000650326 (view in UCSC) ,

URS0000EF3C60_9606 lncRNA 1147 1

Ensembl: ENST00000671605 (view in UCSC) ,

RAD51-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RAD51-AS1 Gene

3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAD51-AS1 Gene

No ASD Table

Relevant External Links for RAD51-AS1 Gene

GeneLoc Exon Structure for
RAD51-AS1

Expression for RAD51-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RAD51-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RAD51-AS1

genes like me logo Genes that share expression patterns with RAD51-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAD51-AS1 Gene

Orthologs for RAD51-AS1 Gene

Evolution for RAD51-AS1 Gene

ENSEMBL:
Gene Tree for RAD51-AS1 (if available)
TreeFam:
Gene Tree for RAD51-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for RAD51-AS1

No data available for Orthologs for RAD51-AS1 Gene

Paralogs for RAD51-AS1 Gene

No data available for Paralogs for RAD51-AS1 Gene

Variants for RAD51-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for RAD51-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for RAD51-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2760026 CNV loss 17122850
nsv529030 CNV loss 19592680
nsv832984 CNV loss 17160897

Additional Variant Information for RAD51-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAD51-AS1
Leiden Open Variation Database (LOVD)
RAD51-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for RAD51-AS1 Gene

Disorders for RAD51-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for RAD51-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
ovarian epithelial cancer
  • eoc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for RAD51-AS1

genes like me logo Genes that share disorders with RAD51-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RAD51-AS1 Gene

Publications for RAD51-AS1 Gene

  1. E2F1-regulated long non-coding RNA RAD51-AS1 promotes cell cycle progression, inhibits apoptosis and predicts poor prognosis in epithelial ovarian cancer. (PMID: 28667302) Zhang X … Hua K (Scientific reports 2017) 3 72
  2. TODRA, a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51, and Enhances RAD51-Dependent DSB (Double Strand Break) Repair. (PMID: 26230935) Gazy I … Levy-Lahad E (PloS one 2015) 2 3
  3. Corylin increases the sensitivity of hepatocellular carcinoma cells to chemotherapy through long noncoding RNA RAD51-AS1-mediated inhibition of DNA repair. (PMID: 29749376) Chen CC … Wang TH (Cell death & disease 2018) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for RAD51-AS1 Gene

Sources for RAD51-AS1 Gene