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Aliases for RABGAP1L-DT Gene

Subcategory (RNA class) for RABGAP1L-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for RABGAP1L-DT Gene

  • RABGAP1L Divergent Transcript 2 3
  • Novel Transcript 5
  • AL121983.2 5

External Ids for RABGAP1L-DT Gene

Summaries for RABGAP1L-DT Gene

GeneCards Summary for RABGAP1L-DT Gene

RABGAP1L-DT (RABGAP1L Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RABGAP1L-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RABGAP1L-DT Gene

Genomics for RABGAP1L-DT Gene

GeneHancer (GH) Regulatory Elements for RABGAP1L-DT Gene

Promoters and enhancers for RABGAP1L-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J174158 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 600.7 +0.2 248 4.5 HDGF ZFX ELF3 ZKSCAN8 CBFA2T2 ZNF148 MLLT1 ZNF121 POLR2A GTF2F1 RABGAP1L RABGAP1L-DT RC3H1 ANKRD45 GAS5 ZBTB37 GC01M174104
GH01J174216 Promoter/Enhancer 1.2 Ensembl ENCODE 9.3 -59.8 -59804 6.2 CEBPG ZNF384 CTCF RAD21 ARID2 CEBPA REST TRIM22 CEBPB TSC22D4 RABGAP1L RABGAP1L-DT GAS5 GC01M174104
GH01J174788 Enhancer 0.9 Ensembl ENCODE 9.5 -629.1 -629097 2.6 CREM ZBED1 NFE2 RUNX3 FOS MAFG MEF2D NR2F1 MAFK BATF RABGAP1L RABGAP1L-DT BANF1P4 GC01M174826
GH01J174727 Enhancer 0.5 Ensembl 9.2 -567.2 -567197 0.4 MAFK CTCF ZNF316 RUNX3 MAFF RABGAP1L-DT GC01M174688 GC01M174687 RABGAP1L
GH01J174841 Enhancer 0.5 Ensembl 8.5 -682.1 -682096 1 IKZF1 IKZF2 RUNX3 JUNB BATF RABGAP1L RABGAP1L-DT NDUFAF4P4 GC01M174826
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RABGAP1L-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for RABGAP1L-DT Gene

Genomic Locations for RABGAP1L-DT Gene
chr1:174,115,300-174,160,004
(GRCh38/hg38)
Size:
44,705 bases
Orientation:
Minus strand

Genomic View for RABGAP1L-DT Gene

Genes around RABGAP1L-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RABGAP1L-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RABGAP1L-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RABGAP1L-DT Gene

Proteins for RABGAP1L-DT Gene

Post-translational modifications for RABGAP1L-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for RABGAP1L-DT Gene

Domains & Families for RABGAP1L-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RABGAP1L-DT Gene

Function for RABGAP1L-DT Gene

Phenotypes From GWAS Catalog for RABGAP1L-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RABGAP1L-DT Gene

Localization for RABGAP1L-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RABGAP1L-DT Gene

Pathways & Interactions for RABGAP1L-DT Gene

PathCards logo

SuperPathways for RABGAP1L-DT Gene

No Data Available

Interacting Proteins for RABGAP1L-DT Gene

Gene Ontology (GO) - Biological Process for RABGAP1L-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RABGAP1L-DT Gene

Drugs & Compounds for RABGAP1L-DT Gene

No Compound Related Data Available

Transcripts for RABGAP1L-DT Gene

mRNA/cDNA for RABGAP1L-DT Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RABGAP1L-DT Gene

No ASD Table

Relevant External Links for RABGAP1L-DT Gene

GeneLoc Exon Structure for
RABGAP1L-DT
ECgene alternative splicing isoforms for
RABGAP1L-DT

Expression for RABGAP1L-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RABGAP1L-DT Gene

Orthologs for RABGAP1L-DT Gene

Evolution for RABGAP1L-DT Gene

ENSEMBL:
Gene Tree for RABGAP1L-DT (if available)
TreeFam:
Gene Tree for RABGAP1L-DT (if available)

No data available for Orthologs for RABGAP1L-DT Gene

Paralogs for RABGAP1L-DT Gene

No data available for Paralogs for RABGAP1L-DT Gene

Variants for RABGAP1L-DT Gene

Sequence variations from dbSNP and Humsavar for RABGAP1L-DT Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000106554 -- 174,160,777(-) C/T upstream_transcript_variant
rs1000205910 -- 174,124,211(-) T/G intron_variant
rs1000288584 -- 174,134,516(-) C/T intron_variant
rs1000294689 -- 174,134,682(-) C/T intron_variant
rs1000302072 -- 174,142,072(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RABGAP1L-DT Gene

Variant ID Type Subtype PubMed ID
esv1162770 CNV insertion 17803354
nsv1130632 CNV deletion 24896259
nsv465661 CNV loss 19166990
nsv548193 CNV loss 21841781
nsv831937 CNV gain 17160897

Additional Variant Information for RABGAP1L-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RABGAP1L-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RABGAP1L-DT Gene

Disorders for RABGAP1L-DT Gene

No disorders were found for RABGAP1L-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RABGAP1L-DT Gene

Publications for RABGAP1L-DT Gene

No publications were found for RABGAP1L-DT Gene.

No data available for External Links for RABGAP1L-DT Gene

Products for RABGAP1L-DT Gene

Sources for RABGAP1L-DT Gene

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