Aliases for RAB6C-AS1 Gene

Data sources for RAB6C-AS1 Gene:

RNA type for RAB6C-AS1 Gene

lncRNA

Aliases for RAB6C-AS1 Gene

External Ids for RAB6C-AS1 Gene

Previous GeneCards Identifiers for RAB6C-AS1 Gene

  • GC02M130726

Summaries for RAB6C-AS1 Gene

GeneCards Summary for RAB6C-AS1 Gene

RAB6C-AS1 (RAB6C Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RAB6C-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RAB6C-AS1 Gene

Genomics for RAB6C-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RAB6C-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J129979 Promoter 1.3 Ensembl CraniofacialAtlas 290.8 +0.5 457 1.2 ZNF600 ATF2 ZNF341 ZNF217 ELF1 SP2 SIN3A ZNF2 SPI1 ZNF189 RAB6C-AS1 RAB6C PTPN18 POTEF
GH02J129933 Promoter/Enhancer 0.9 Ensembl ENCODE 34.4 +45.8 45768 2.4 ZNF366 KDM1A EZH2 PLAC9P1 lnc-POTEF-1 piR-61945-285 RAB6C-AS1 LINC01856 RAB6C
GH02J129929 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 26.7 +50.6 50572 2.2 JUND CTCF ATF2 GLIS1 CREB1 CHD2 RAB6C-AS1 CCDC115 PTPN18 PLAC9P1 lnc-POTEF-1 LINC01856 RAB6C
GH02J130130 Promoter 1.1 EPDnew Ensembl 18.8 -149.2 -149229 4.2 IKZF1 SAP130 THRB MLLT1 NFYC CTCF ARID4B ZNF512 MNT RNF2 POTEF MED15P9 lnc-MZT2B-1 MZT2B RAB6C-AS1 CCDC74B lnc-CCDC74B-1
GH02J130036 Promoter 0.6 Ensembl 24.8 -56.5 -56529 1.2 SIN3A CTCF ZNF687 KLF2P1 lnc-RAB6C-7 RAB6C-AS1 piR-36816-001 FAR2P1 ENSG00000286058 ENSG00000286026 RAB6C POTEF
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RAB6C-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RAB6C-AS1 Gene

Latest Assembly
chr2:129,966,591-129,980,472
(GRCh38/hg38)
Size:
13,882 bases
Orientation:
Minus strand

Previous Assembly
chr2:130,724,165-130,738,045
(GRCh37/hg19 by Entrez Gene)
Size:
13,881 bases
Orientation:
Minus strand

chr2:130,724,165-130,738,039
(GRCh37/hg19 by Ensembl)
Size:
13,875 bases
Orientation:
Minus strand

Genomic View for RAB6C-AS1 Gene

Genes around RAB6C-AS1 on UCSC Golden Path with GeneCards custom track
RAB6C-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
RAB6C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB6C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB6C-AS1 Gene

Proteins for RAB6C-AS1 Gene

Post-translational modifications for RAB6C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB6C-AS1 Gene

Domains & Families for RAB6C-AS1 Gene

Gene Families for RAB6C-AS1 Gene

genes like me logo Genes that share domains with RAB6C-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RAB6C-AS1 Gene

Function for RAB6C-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB6C-AS1 Gene

Localization for RAB6C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAB6C-AS1 Gene

Pathways & Interactions for RAB6C-AS1 Gene

PathCards logo

SuperPathways for RAB6C-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RAB6C-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RAB6C-AS1 Gene

Drugs & Compounds for RAB6C-AS1 Gene

No Compound Related Data Available

Transcripts for RAB6C-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RAB6C-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000759F3A_9606 lncRNA 2460 1

RefSeq: NR_036537,

URS00009B9769_9606 lncRNA 2460 3

LncBook: HSALNT0039720,

LNCipedia: lnc-POTEF-8:2,

NONCODE: NONHSAT074251.2,

URS00008BBCD3_9606 lncRNA 2109 2

LNCipedia: lnc-POTEF-8:1,

NONCODE: NONHSAT074252.2,

URS00008C0F48_9606 lncRNA 1900 2

LNCipedia: lnc-POTEF-8:3,

NONCODE: NONHSAT074253.2,

URS0001BDA85B_9606 lncRNA 2460 1

LncBook: HSALNT0039720,

RAB6C-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RAB6C-AS1 Gene

3 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAB6C-AS1 Gene

No ASD Table

Relevant External Links for RAB6C-AS1 Gene

GeneLoc Exon Structure for
RAB6C-AS1

Expression for RAB6C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RAB6C-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RAB6C-AS1

genes like me logo Genes that share expression patterns with RAB6C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB6C-AS1 Gene

Orthologs for RAB6C-AS1 Gene

Evolution for RAB6C-AS1 Gene

ENSEMBL:
Gene Tree for RAB6C-AS1 (if available)
TreeFam:
Gene Tree for RAB6C-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for RAB6C-AS1

No data available for Orthologs for RAB6C-AS1 Gene

Paralogs for RAB6C-AS1 Gene

No data available for Paralogs for RAB6C-AS1 Gene

Variants for RAB6C-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for RAB6C-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for RAB6C-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4071n100 CNV loss 25217958
esv2751826 CNV gain 17911159
esv2759092 CNV gain+loss 17122850
esv29254 CNV loss 19812545
esv3592434 CNV loss 21293372
nsv1003941 CNV gain 25217958
nsv10157 CNV loss 18304495
nsv428403 CNV loss 18775914
nsv459274 CNV loss 19166990
nsv471419 CNV gain 19718026
nsv583046 CNV loss 21841781
nsv821629 CNV loss 15273396
nsv834374 CNV gain 17160897
nsv961879 CNV duplication 23825009
nsv963840 CNV duplication 23825009

Additional Variant Information for RAB6C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB6C-AS1
Leiden Open Variation Database (LOVD)
RAB6C-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for RAB6C-AS1 Gene

Disorders for RAB6C-AS1 Gene

Additional Disease Information for RAB6C-AS1

No disorders were found for RAB6C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB6C-AS1 Gene

Publications for RAB6C-AS1 Gene

  1. Potential role of RAB6C-AS1 long noncoding RNA in different cancers. (PMID: 30076712) Salavaty A … Soleimanpour-Lichaei HR (Journal of cellular physiology 2018) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Lineage-specific gene duplication and loss in human and great ape evolution. (PMID: 15252450) Fortna A … Sikela JM (PLoS biology 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for RAB6C-AS1 Gene

Sources for RAB6C-AS1 Gene