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Aliases for RAB5IF Gene

Aliases for RAB5IF Gene

  • RAB5 Interacting Factor 2 3 5
  • Uncharacterized Protein RAB5IF 3 4
  • Rab5-Interacting Protein 3 4
  • C20orf24 3 4
  • RIP5 3 4
  • Chromosome 20 Open Reading Frame 24 2
  • Uncharacterized Protein C20orf24 3
  • PNAS-11 3

External Ids for RAB5IF Gene

Previous HGNC Symbols for RAB5IF Gene

  • C20orf24

Summaries for RAB5IF Gene

GeneCards Summary for RAB5IF Gene

RAB5IF (RAB5 Interacting Factor) is a Protein Coding gene. Diseases associated with RAB5IF include Intestinal Benign Neoplasm. An important paralog of this gene is TGIF2-RAB5IF.

Additional gene information for RAB5IF Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB5IF Gene

Genomics for RAB5IF Gene

GeneHancer (GH) Regulatory Elements for RAB5IF Gene

Promoters and enhancers for RAB5IF Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J036604 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 600.7 +0.9 931 4.7 MTA3 ZNF652 SP1 ZFX ELF3 CTCF ZKSCAN8 MNT ZNF148 NKRF RAB5IF RBL1 RBM12 RBM39 MYL9 GC20M036587 TGIF2-RAB5IF
GH20J036643 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.1 +40.2 40215 4.1 ELF3 CEBPG HNF1A PPARG ZNF644 IKZF1 CEBPA GATAD2A ZNF7 KMT2B SLA2 NDRG3 RAB5IF RBL1 SAMHD1 TGIF2 HNRNPA3P2
GH20J036875 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 11 +270.3 270253 1.6 IKZF1 ZNF644 KAT8 ZNF24 IKZF2 GATAD2A NFKBIZ RXRB ZSCAN4 ZNF205 TLDC2 DSN1 RAB5IF RN7SL156P
GH20J036627 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 13.8 +23.5 23485 3.6 SP1 CEBPG CREB1 CEBPA ATF1 ATF7 ZNF24 SCRT2 RUNX3 FOXA2 RAB5IF NDRG3 MYL9 SLA2 RBL1 HNRNPA3P2
GH20J036583 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.4 -20.7 -20661 3.7 SP1 ZSCAN21 SP7 ZNF384 FOSL2 ZNF600 PRDM10 ZEB2 ZNF639 ATF7 RAB5IF MYL9 PIR36258 TGIF2-RAB5IF TGIF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RAB5IF on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAB5IF Gene

Genomic Locations for RAB5IF Gene
chr20:36,605,734-36,612,557
(GRCh38/hg38)
Size:
6,824 bases
Orientation:
Plus strand
chr20:35,234,137-35,240,960
(GRCh37/hg19)
Size:
6,824 bases
Orientation:
Plus strand

Genomic View for RAB5IF Gene

Genes around RAB5IF on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB5IF Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB5IF Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB5IF Gene

Proteins for RAB5IF Gene

  • Protein details for RAB5IF Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BUV8-RAB5I_HUMAN
    Recommended name:
    Uncharacterized protein RAB5IF
    Protein Accession:
    Q9BUV8
    Secondary Accessions:
    • E1P5U0
    • O00605
    • Q5QPG6
    • Q5QPG7
    • Q9BT03
    • Q9BZU7
    • Q9UI05

    Protein attributes for RAB5IF Gene

    Size:
    137 amino acids
    Molecular mass:
    15487 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RAB5IF Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RAB5IF Gene

Post-translational modifications for RAB5IF Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RAB5IF Gene

No data available for DME Specific Peptides for RAB5IF Gene

Domains & Families for RAB5IF Gene

Gene Families for RAB5IF Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for RAB5IF Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RAB5IF Gene

GenScript: Design optimal peptide antigens:
  • Rab5-interacting protein (CT024_HUMAN)

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RAB5IF: view

No data available for UniProtKB/Swiss-Prot for RAB5IF Gene

Function for RAB5IF Gene

Phenotypes From GWAS Catalog for RAB5IF Gene

Gene Ontology (GO) - Molecular Function for RAB5IF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with RAB5IF: view
genes like me logo Genes that share phenotypes with RAB5IF: view

Animal Model Products

Clone Products

  • Applied Biological Materials (abm): Clones for RAB5IF - Now 50% OFF >
  • * RAB5IF as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * RAB5IF tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RAB5IF Gene

Localization for RAB5IF Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RAB5IF gene
Compartment Confidence
plasma membrane 2
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1
cytosol 1
extracellular 0

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for RAB5IF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RAB5IF: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RAB5IF Gene

Pathways & Interactions for RAB5IF Gene

PathCards logo

SuperPathways for RAB5IF Gene

No Data Available

Gene Ontology (GO) - Biological Process for RAB5IF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with RAB5IF: view

No data available for Pathways by source and SIGNOR curated interactions for RAB5IF Gene

Drugs & Compounds for RAB5IF Gene

No Compound Related Data Available

Transcripts for RAB5IF Gene

Clone Products

  • Applied Biological Materials (abm): Clones for RAB5IF - Now 50% OFF >
  • * RAB5IF as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * RAB5IF tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

Alternative Splicing Database (ASD) splice patterns (SP) for RAB5IF Gene

No ASD Table

Relevant External Links for RAB5IF Gene

GeneLoc Exon Structure for
RAB5IF
ECgene alternative splicing isoforms for
RAB5IF

Expression for RAB5IF Gene

NURSA nuclear receptor signaling pathways regulating expression of RAB5IF Gene:

RAB5IF

Evidence on tissue expression from TISSUES for RAB5IF Gene

  • Nervous system(3.4)
  • Lung(3)
  • Intestine(2.5)
  • Skin(2.4)
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB5IF Gene

Orthologs for RAB5IF Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RAB5IF Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TGIF2 34
  • 99.51 (n)
dog
(Canis familiaris)
Mammalia C24H20orf24 34
  • 86.82 (n)
mouse
(Mus musculus)
Mammalia 1110008F13Rik 34
  • 86.3 (n)
Rab5if 17
rat
(Rattus norvegicus)
Mammalia RGD1307752 34
  • 86.3 (n)
cow
(Bos Taurus)
Mammalia C13H20orf24 34
  • 85.79 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 36 (a)
OneToMany
chicken
(Gallus gallus)
Aves C20H20ORF24 35 34
  • 73.13 (n)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 44 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia c20orf24 34
  • 67.2 (n)
Str.6359 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.7273 34
zebrafish
(Danio rerio)
Actinopterygii c20orf24 34 34
  • 65.07 (n)
C23H20orf24 35
  • 42 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG12107 35 34
  • 56.21 (n)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004838 34
  • 51.73 (n)
worm
(Caenorhabditis elegans)
Secernentea F44E7.9 35 34
  • 49.83 (n)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G29020 34
  • 46.9 (n)
rice
(Oryza sativa)
Liliopsida Os05g0110600 34
  • 52.08 (n)
Species where no ortholog for RAB5IF was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RAB5IF Gene

ENSEMBL:
Gene Tree for RAB5IF (if available)
TreeFam:
Gene Tree for RAB5IF (if available)

Paralogs for RAB5IF Gene

Paralogs for RAB5IF Gene

genes like me logo Genes that share paralogs with RAB5IF: view

Variants for RAB5IF Gene

Sequence variations from dbSNP and Humsavar for RAB5IF Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000014129 -- 36,609,297(+) G/A intron_variant
rs1000139994 -- 36,604,693(+) C/G upstream_transcript_variant
rs1001014514 -- 36,610,467(+) C/T intron_variant
rs1001032150 -- 36,605,725(+) T/A/C/G upstream_transcript_variant
rs1001048874 -- 36,610,239(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RAB5IF Gene

Variant ID Type Subtype PubMed ID
nsv1057192 CNV loss 25217958
nsv833967 CNV loss 17160897

Variation tolerance for RAB5IF Gene

Residual Variation Intolerance Score: 55.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.15; 3.40% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RAB5IF Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB5IF

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAB5IF Gene

Disorders for RAB5IF Gene

MalaCards: The human disease database

(1) MalaCards diseases for RAB5IF Gene - From: DISEASES

Disorder Aliases PubMed IDs
intestinal benign neoplasm
  • intestinal tumors
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for RAB5IF

genes like me logo Genes that share disorders with RAB5IF: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RAB5IF Gene

Publications for RAB5IF Gene

  1. The GDP/GTP cycle of Rab5 in the regulation of endocytotic membrane traffic. (PMID: 8824393) Vitale G … Zerial M (Cold Spring Harbor symposia on quantitative biology 1995) 2 3 4 58
  2. Rab5 affinity chromatography without nonhydrolyzable GTP analogues. (PMID: 19526728) Hagiwara M … Yamamoto Y (Zeitschrift fur Naturforschung. C, Journal of biosciences 2009) 2 3 58
  3. An unappreciated role for RNA surveillance. (PMID: 14759258) Hillman RT … Brenner SE (Genome biology 2004) 3 4 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P … Rogers J (Nature 2001) 3 4 58

Products for RAB5IF Gene

Sources for RAB5IF Gene

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