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RAB43P1 Gene(Pseudogene)

RAB43 Pseudogene 1

GCID:
GC16M046623
GIFtS:
13
Genes Participants
UDN Logo

Aliases for RAB43P1 Gene

Aliases for RAB43P1 Gene

  • RAB43 Pseudogene 1 2 3 5
  • RAB41, Member RAS Homolog Family, Pseudogene 3
  • RAB43 Pseudogene 2
  • RAB41P 3
  • RAB43P 3

External Ids for RAB43P1 Gene

Previous HGNC Symbols for RAB43P1 Gene

  • RAB43P

Previous GeneCards Identifiers for RAB43P1 Gene

  • GC16M046656
  • GC16M032545

Summaries for RAB43P1 Gene

GeneCards Summary for RAB43P1 Gene

RAB43P1 (RAB43 Pseudogene 1) is a Pseudogene.

Additional gene information for RAB43P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB43P1 Gene

Genomics for RAB43P1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RAB43P1 Gene

Promoters and enhancers for RAB43P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16I046626 Promoter 0.5 Ensembl 550.8 +0.1 93 0.2 RAB43P1 ENSG00000261512 GC16P046597 GC16P046596
GH16I046629 Enhancer 0.9 Ensembl ENCODE 0.8 -2.8 -2796 0.8 MEIS2 CTCF PKNOX1 ATF1 FOXA2 SAP130 RAD21 RFX5 ZNF335 SMC3 RAB43P1 ENSG00000260909 GC16P046596 GC16P046597
GH16I046632 Enhancer 1 Ensembl ENCODE 0.4 -6.4 -6392 1.2 ELF3 ARID4B SIN3A DMAP1 ZNF48 SLC30A9 THAP11 KLF11 NFYC ELF1 SHCBP1 GPT2 RAB43P1 ENSG00000260909 GC16P046597 GC16P046596
GH16I046622 Enhancer 0.2 Ensembl 0.8 +3.5 3543 1.3 ENSG00000261512 SHCBP1 RAB43P1 GC16P046596 GC16P046597
GH16I046637 Enhancer 0.2 FANTOM5 0.4 -10.6 -10635 0 ENSG00000260909 RAB43P1 GC16P046596 GC16P046597
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAB43P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAB43P1 Gene

Genomic Locations for RAB43P1 Gene
chr16:46,622,875-46,626,994
(GRCh38/hg38)
Size:
4,120 bases
Orientation:
Minus strand
chr16:46,656,787-46,660,906
(GRCh37/hg19)

Genomic View for RAB43P1 Gene

Genes around RAB43P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB43P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB43P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RAB43P1 Gene

Proteins for RAB43P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Protein Expression for RAB43P1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for RAB43P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB43P1 Gene

Domains & Families for RAB43P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAB43P1 Gene

Function for RAB43P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB43P1 Gene

Localization for RAB43P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAB43P1 Gene

Pathways & Interactions for RAB43P1 Gene

SuperPathways for RAB43P1 Gene

PathCards logo More details on SuperPathways for RAB43P1
No Data Available

Interacting Proteins for RAB43P1 Gene

Gene Ontology (GO) - Biological Process for RAB43P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAB43P1 Gene

Drugs & Compounds for RAB43P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RAB43P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RAB43P1 Gene

(68) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAB43P1 Gene

No ASD Table

Relevant External Links for RAB43P1 Gene

GeneLoc Exon Structure for
RAB43P1
ECgene alternative splicing isoforms for
RAB43P1

Expression for RAB43P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAB43P1 Gene

mRNA expression in normal human tissues for RAB43P1 Gene
mRNA expression by GTEx for RAB43P1 Gene

mRNA differential expression in normal tissues according to GTEx for RAB43P1 Gene

This gene is overexpressed in Whole Blood (x10.1).

Protein differential expression in normal tissues from HIPED for RAB43P1 Gene

This gene is overexpressed in Brain (66.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RAB43P1 Gene



Protein tissue co-expression partners for RAB43P1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RAB43P1 Gene:

RAB43P1
genes like me logo Genes that share expression patterns with RAB43P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB43P1 Gene

Orthologs for RAB43P1 Gene

Evolution for RAB43P1 Gene

ENSEMBL:
Gene Tree for RAB43P1 (if available)
TreeFam:
Gene Tree for RAB43P1 (if available)

No data available for Orthologs for RAB43P1 Gene

Paralogs for RAB43P1 Gene

No data available for Paralogs for RAB43P1 Gene

Variants for RAB43P1 Gene

Additional Variant Information for RAB43P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB43P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RAB43P1 Gene

Disorders for RAB43P1 Gene

No disorders were found for RAB43P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RAB43P1 Gene

Publications for RAB43P1 Gene

  1. Isolation, expression pattern of a novel human RAB gene RAB41 and characterization of its intronless homolog RAB41P. (PMID: 15018353) Guo JH … Zhao SY (DNA sequence : the journal of DNA sequencing and mapping 2003) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for RAB43P1 Gene

Sources for RAB43P1 Gene

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