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Aliases for RAB42 Gene

Aliases for RAB42 Gene

  • RAB42, Member RAS Oncogene Family 2 3 5
  • RAB42, Member RAS Homolog Family 2

External Ids for RAB42 Gene

Previous GeneCards Identifiers for RAB42 Gene

  • GC00U906277
  • GC14U900439
  • GC01P028740
  • GC01P028791
  • GC01P028918
  • GC01P027171

Summaries for RAB42 Gene

GeneCards Summary for RAB42 Gene

RAB42 (RAB42, Member RAS Oncogene Family) is a Protein Coding gene. Among its related pathways are Metabolism of proteins and RAB geranylgeranylation. Gene Ontology (GO) annotations related to this gene include GTP binding and GTPase activity. An important paralog of this gene is RAB39A.

Additional gene information for RAB42 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB42 Gene

Genomics for RAB42 Gene

GeneHancer (GH) Regulatory Elements for RAB42 Gene

Promoters and enhancers for RAB42 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I028589 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 550.8 +0.9 858 7 PKNOX1 SMAD1 MLX ARNT ZFP64 ARID4B FEZF1 ZNF766 PAF1 MXD4 RAB42 PHACTR4 THEMIS2 ENSG00000271398 TAF12
GH01I028171 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 19.4 -417.8 -417799 6.4 HDGF PKNOX1 FOXA2 SMAD1 ARNT FEZF1 YBX1 IRF4 ZNF766 ZNF213 PTAFR SNHG12 GMEB1 TRNAU1AP ACTG1P20 YTHDF2 PHACTR4 NPM1P39 SNORA73B ENSG00000231344
GH01I028881 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.6 +293.0 293042 6.8 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 EPB41 LOC105376898 SRSF4 TRNAU1AP GMEB1 SNHG12 YTHDF2 PHACTR4 EYA3 TMEM200B
GH01I027614 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.6 -966.4 -966362 23.4 HDGF PKNOX1 FOXA2 SMAD1 SIN3A YBX1 IRF4 ZNF121 ZNF207 ZNF143 FGR ACTG1P20 ARID1A EYA3 FAM76A TRNAU1AP NPM1P39 THEMIS2 PTAFR SNHG12
GH01I028551 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.9 -39.0 -39029 2.5 HDGF PKNOX1 SMAD1 ARNT ARID4B NEUROD1 SIN3A YBX1 DMAP1 ZBTB7B TRNAU1AP PRDX3P2 SNORA61 SNORD99 SNORA73B SNHG3 RCC1 PHACTR4 RAB42 DNAJC8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAB42 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RAB42 gene promoter:

Genomic Locations for RAB42 Gene

Genomic Locations for RAB42 Gene
chr1:28,592,200-28,595,443
(GRCh38/hg38)
Size:
3,244 bases
Orientation:
Plus strand
chr1:28,918,712-28,921,955
(GRCh37/hg19)

Genomic View for RAB42 Gene

Genes around RAB42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB42 Gene

Proteins for RAB42 Gene

  • Protein details for RAB42 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N4Z0-RAB42_HUMAN
    Recommended name:
    Ras-related protein Rab-42
    Protein Accession:
    Q8N4Z0
    Secondary Accessions:
    • A0A1W2PQ57
    • B2R5G2

    Protein attributes for RAB42 Gene

    Size:
    218 amino acids
    Molecular mass:
    24133 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RAB42 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RAB42 Gene

Post-translational modifications for RAB42 Gene

No Post-translational modifications

Other Protein References for RAB42 Gene

No data available for DME Specific Peptides for RAB42 Gene

Domains & Families for RAB42 Gene

Gene Families for RAB42 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for RAB42 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RAB42 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N4Z0

UniProtKB/Swiss-Prot:

RAB42_HUMAN :
  • Belongs to the small GTPase superfamily. Rab family.
Family:
  • Belongs to the small GTPase superfamily. Rab family.
genes like me logo Genes that share domains with RAB42: view

Function for RAB42 Gene

Gene Ontology (GO) - Molecular Function for RAB42 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity IEA --
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with RAB42: view

Phenotypes for RAB42 Gene

genes like me logo Genes that share phenotypes with RAB42: view

Clone Products

  • Addgene plasmids for RAB42

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RAB42 Gene

Localization for RAB42 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAB42 Gene

Membrane; Lipid-anchor.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RAB42 gene
Compartment Confidence
cytosol 3
extracellular 2
nucleus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Endoplasmic reticulum (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for RAB42 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with RAB42: view

Pathways & Interactions for RAB42 Gene

genes like me logo Genes that share pathways with RAB42: view

Pathways by source for RAB42 Gene

Gene Ontology (GO) - Biological Process for RAB42 Gene

None

No data available for SIGNOR curated interactions for RAB42 Gene

Drugs & Compounds for RAB42 Gene

No Compound Related Data Available

Transcripts for RAB42 Gene

mRNA/cDNA for RAB42 Gene

Unigene Clusters for RAB42 Gene

RAB42, member RAS oncogene family:
Representative Sequences:

Clone Products

  • Addgene plasmids for RAB42

Alternative Splicing Database (ASD) splice patterns (SP) for RAB42 Gene

No ASD Table

Relevant External Links for RAB42 Gene

GeneLoc Exon Structure for
RAB42
ECgene alternative splicing isoforms for
RAB42

Expression for RAB42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAB42 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RAB42 Gene



NURSA nuclear receptor signaling pathways regulating expression of RAB42 Gene:

RAB42

SOURCE GeneReport for Unigene cluster for RAB42 Gene:

Hs.652321

Evidence on tissue expression from TISSUES for RAB42 Gene

  • Kidney(4)
  • Nervous system(4)
genes like me logo Genes that share expression patterns with RAB42: view

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB42 Gene

Orthologs for RAB42 Gene

This gene was present in the common ancestor of animals.

Orthologs for RAB42 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RAB42 33 34
  • 99.85 (n)
dog
(Canis familiaris)
Mammalia RAB42 33 34
  • 88.84 (n)
cow
(Bos Taurus)
Mammalia RAB42 33 34
  • 86.85 (n)
mouse
(Mus musculus)
Mammalia Rab42 33 16 34
  • 83.72 (n)
oppossum
(Monodelphis domestica)
Mammalia RAB42 34
  • 30 (a)
OneToOne
chicken
(Gallus gallus)
Aves RAB42 34
  • 22 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii rab42a 34
  • 18 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Rab39 34
  • 15 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea rab-39 34
  • 16 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 18 (a)
OneToMany
Species where no ortholog for RAB42 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RAB42 Gene

ENSEMBL:
Gene Tree for RAB42 (if available)
TreeFam:
Gene Tree for RAB42 (if available)

Paralogs for RAB42 Gene

(23) SIMAP similar genes for RAB42 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RAB42: view

Variants for RAB42 Gene

Sequence variations from dbSNP and Humsavar for RAB42 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000066869 -- 28,592,950(+) G/A intron_variant
rs1000544409 -- 28,594,799(+) G/A 3_prime_UTR_variant, downstream_transcript_variant, genic_downstream_transcript_variant
rs1000669088 -- 28,591,002(+) C/T upstream_transcript_variant
rs1001145277 -- 28,590,868(+) G/A upstream_transcript_variant
rs1001994341 -- 28,591,368(+) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RAB42 Gene

Variant ID Type Subtype PubMed ID
nsv545916 CNV gain 21841781

Variation tolerance for RAB42 Gene

Residual Variation Intolerance Score: 57.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.44; 28.24% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RAB42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB42

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAB42 Gene

Disorders for RAB42 Gene

Additional Disease Information for RAB42

No disorders were found for RAB42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB42 Gene

Publications for RAB42 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RAB42 Gene

  • Addgene plasmids for RAB42

Sources for RAB42 Gene

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