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Aliases for RAB30-AS1 Gene

Subcategory (RNA class) for RAB30-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RAB30-AS1 Gene

  • RAB30 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for RAB30-AS1 Gene

Previous GeneCards Identifiers for RAB30-AS1 Gene

  • GC11P082787

Summaries for RAB30-AS1 Gene

GeneCards Summary for RAB30-AS1 Gene

RAB30-AS1 (RAB30 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RAB30-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB30-AS1 Gene

Genomics for RAB30-AS1 Gene

GeneHancer (GH) Regulatory Elements for RAB30-AS1 Gene

Promoters and enhancers for RAB30-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I083068 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 578.3 -0.3 -346 5.5 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 RAB30-AS1 RAB30 LOC100506282 ENSG00000254676 PCF11 SNORA70E ENSG00000254522 ENSG00000254698 ENSG00000255503 GC11M083042
GH11I083155 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.1 +87.4 87363 8 ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1 GLIS1 PCF11 GC11P083158 ANKRD42 LOC100506282 ENSG00000254676 RAB30 RAB30-AS1 ENSG00000254551 ENSG00000254522 SNORA70E
GH11I082993 Enhancer 1.2 Ensembl ENCODE dbSUPER 20.1 -76.1 -76054 4.3 HDGF RB1 BATF RAD21 KLF5 IRF4 SCRT2 ZNF207 ZNF143 ATF7 RAB30 RAB30-AS1 ENSG00000254698 SNORA70E ENSG00000254522 PRCP DDIAS GC11M082975
GH11I082988 Enhancer 1.1 ENCODE dbSUPER 17.4 -82.9 -82947 1.9 FOXA2 ARID4B DMAP1 ZNF48 ETS1 TCF12 NFYC MXD4 PPARG NFIL3 RAB30-AS1 RAB30 ENSG00000254698 ENSG00000254522 SNORA70E DDIAS GC11M082975
GH11I082959 Enhancer 1.1 Ensembl ENCODE dbSUPER 17.2 -111.6 -111575 2.1 PKNOX1 EBF1 FEZF1 ZIC2 IRF4 NFATC1 ATF7 ETV6 IKZF2 RUNX3 DDIAS RAB30-AS1 RAB30 ENSG00000254698 ENSG00000254522 SNORA70E PRCP ENSG00000242279
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAB30-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAB30-AS1 Gene

Genomic Locations for RAB30-AS1 Gene
chr11:83,072,066-83,106,719
(GRCh38/hg38)
Size:
34,654 bases
Orientation:
Plus strand
chr11:82,783,108-82,817,761
(GRCh37/hg19)

Genomic View for RAB30-AS1 Gene

Genes around RAB30-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB30-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB30-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB30-AS1 Gene

Proteins for RAB30-AS1 Gene

Post-translational modifications for RAB30-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB30-AS1 Gene

Domains & Families for RAB30-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAB30-AS1 Gene

Function for RAB30-AS1 Gene

Phenotypes From GWAS Catalog for RAB30-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB30-AS1 Gene

Localization for RAB30-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAB30-AS1 Gene

Pathways & Interactions for RAB30-AS1 Gene

SuperPathways for RAB30-AS1 Gene

No Data Available

Interacting Proteins for RAB30-AS1 Gene

Gene Ontology (GO) - Biological Process for RAB30-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAB30-AS1 Gene

Drugs & Compounds for RAB30-AS1 Gene

No Compound Related Data Available

Transcripts for RAB30-AS1 Gene

mRNA/cDNA for RAB30-AS1 Gene

(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RAB30-AS1 Gene

No ASD Table

Relevant External Links for RAB30-AS1 Gene

GeneLoc Exon Structure for
RAB30-AS1
ECgene alternative splicing isoforms for
RAB30-AS1

Expression for RAB30-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAB30-AS1 Gene

genes like me logo Genes that share expression patterns with RAB30-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB30-AS1 Gene

Orthologs for RAB30-AS1 Gene

Evolution for RAB30-AS1 Gene

ENSEMBL:
Gene Tree for RAB30-AS1 (if available)
TreeFam:
Gene Tree for RAB30-AS1 (if available)

No data available for Orthologs for RAB30-AS1 Gene

Paralogs for RAB30-AS1 Gene

No data available for Paralogs for RAB30-AS1 Gene

Variants for RAB30-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAB30-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000388249 -- 83,072,181(+) G/A intron_variant
rs1000607557 -- 83,072,048(+) T/C upstream_transcript_variant
rs1000899314 -- 83,070,351(+) T/C upstream_transcript_variant
rs1001619840 -- 83,071,592(+) C/T upstream_transcript_variant
rs1003187031 -- 83,070,725(+) AAAAAAA/AAAAAA upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RAB30-AS1 Gene

Variant ID Type Subtype PubMed ID
esv33531 CNV loss 17666407
nsv414 CNV insertion 18451855

Additional Variant Information for RAB30-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB30-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAB30-AS1 Gene

Disorders for RAB30-AS1 Gene

Additional Disease Information for RAB30-AS1

No disorders were found for RAB30-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB30-AS1 Gene

Publications for RAB30-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RAB30-AS1 Gene

Sources for RAB30-AS1 Gene

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