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Aliases for RAB19 Gene

Aliases for RAB19 Gene

  • RAB19, Member RAS Oncogene Family 2 3 5
  • RAB19B 3 4
  • GTP-Binding Protein RAB19B 3
  • Ras-Related Protein Rab-19 3

External Ids for RAB19 Gene

Previous GeneCards Identifiers for RAB19 Gene

  • GC07P139754
  • GC07P140103
  • GC07P134397

Summaries for RAB19 Gene

GeneCards Summary for RAB19 Gene

RAB19 (RAB19, Member RAS Oncogene Family) is a Protein Coding gene. Among its related pathways are Metabolism of proteins and RAB geranylgeranylation. Gene Ontology (GO) annotations related to this gene include GTP binding and GTPase activity. An important paralog of this gene is RAB43.

Additional gene information for RAB19 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB19 Gene

Genomics for RAB19 Gene

GeneHancer (GH) Regulatory Elements for RAB19 Gene

Promoters and enhancers for RAB19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I140403 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 550.8 +0.5 456 1.2 PKNOX1 SIN3A ETS1 NCOA2 ZNF335 ZNF366 SCRT2 ZNF143 THAP11 ZNF362 SLC37A3 RAB19
GH07I140229 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 1.4 -172.0 -171985 5.7 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 IRF4 SLC30A9 KDM7A RNU6-797P JHDM1D-AS1 TBXAS1 RAB19 GC07P140221 RNU1-58P
GH07I140397 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 -5.6 -5606 1.8 PKNOX1 ARNT ARID4B SIN3A DMAP1 POLR2B ZNF213 ZNF143 SP3 MXD4 SLC37A3 RAB19 RNA5SP248
GH07I140396 Enhancer 0.9 ENCODE 0.4 -7.2 -7206 0.2 PKNOX1 CLOCK FEZF1 ZNF2 BRCA1 ZNF213 KLF7 KLF13 YY2 TSHZ1 RAB19 RNA5SP248 SLC37A3
GH07I140389 Enhancer 0.9 Ensembl ENCODE 0.4 -13.2 -13221 1.6 HDAC1 RB1 MAX EBF1 ZFHX2 POLR2A ADNP SCRT2 IKZF2 RUNX3 TBXAS1 SLC37A3 RNA5SP248 RAB19
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RAB19 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RAB19 gene promoter:

Genomic Locations for RAB19 Gene

Genomic Locations for RAB19 Gene
chr7:140,403,822-140,426,878
(GRCh38/hg38)
Size:
23,057 bases
Orientation:
Plus strand
chr7:140,103,843-140,126,050
(GRCh37/hg19)

Genomic View for RAB19 Gene

Genes around RAB19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB19 Gene

Proteins for RAB19 Gene

  • Protein details for RAB19 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A4D1S5-RAB19_HUMAN
    Recommended name:
    Ras-related protein Rab-19
    Protein Accession:
    A4D1S5
    Secondary Accessions:
    • A4D1S6
    • B2RTS6
    • B5MDR2
    • Q9UL27

    Protein attributes for RAB19 Gene

    Size:
    217 amino acids
    Molecular mass:
    24400 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for RAB19 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RAB19 Gene

Post-translational modifications for RAB19 Gene

No Post-translational modifications

Other Protein References for RAB19 Gene

No data available for DME Specific Peptides for RAB19 Gene

Domains & Families for RAB19 Gene

Gene Families for RAB19 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for RAB19 Gene

Suggested Antigen Peptide Sequences for RAB19 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A4D1S5

UniProtKB/Swiss-Prot:

RAB19_HUMAN :
  • Belongs to the small GTPase superfamily. Rab family.
Family:
  • Belongs to the small GTPase superfamily. Rab family.
genes like me logo Genes that share domains with RAB19: view

Function for RAB19 Gene

Phenotypes From GWAS Catalog for RAB19 Gene

Gene Ontology (GO) - Molecular Function for RAB19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003924 GTPase activity IEA --
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with RAB19: view
genes like me logo Genes that share phenotypes with RAB19: view

Animal Models for RAB19 Gene

MGI Knock Outs for RAB19:

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for RAB19 Gene

Localization for RAB19 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAB19 Gene

Cell membrane; Lipid-anchor; Cytoplasmic side.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RAB19 gene
Compartment Confidence
extracellular 5
plasma membrane 3
cytosol 3
golgi apparatus 3
endosome 3
nucleus 2
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for RAB19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005768 endosome IBA --
GO:0005794 Golgi apparatus IBA --
GO:0005886 plasma membrane IEA --
GO:0016020 membrane IEA --
GO:0070062 extracellular exosome HDA,IDA 19056867
genes like me logo Genes that share ontologies with RAB19: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for RAB19 Gene

Pathways & Interactions for RAB19 Gene

genes like me logo Genes that share pathways with RAB19: view

Pathways by source for RAB19 Gene

Interacting Proteins for RAB19 Gene

Gene Ontology (GO) - Biological Process for RAB19 Gene

None

No data available for SIGNOR curated interactions for RAB19 Gene

Drugs & Compounds for RAB19 Gene

No Compound Related Data Available

Transcripts for RAB19 Gene

mRNA/cDNA for RAB19 Gene

(5) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RAB19 Gene

RAB19, member RAS oncogene family:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RAB19 Gene

No ASD Table

Relevant External Links for RAB19 Gene

GeneLoc Exon Structure for
RAB19
ECgene alternative splicing isoforms for
RAB19

Expression for RAB19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAB19 Gene

mRNA differential expression in normal tissues according to GTEx for RAB19 Gene

This gene is overexpressed in Whole Blood (x8.2), Pancreas (x7.9), Colon - Transverse (x6.9), Pituitary (x6.4), and Kidney - Cortex (x5.4).

Protein differential expression in normal tissues from HIPED for RAB19 Gene

This gene is overexpressed in Cerebrospinal fluid (15.4), Platelet (11.6), and Monocytes (10.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RAB19 Gene



NURSA nuclear receptor signaling pathways regulating expression of RAB19 Gene:

RAB19

SOURCE GeneReport for Unigene cluster for RAB19 Gene:

Hs.583545
genes like me logo Genes that share expression patterns with RAB19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB19 Gene

Orthologs for RAB19 Gene

This gene was present in the common ancestor of animals.

Orthologs for RAB19 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RAB19 33 34
  • 99.54 (n)
dog
(Canis familiaris)
Mammalia RAB19 33 34
  • 87.1 (n)
mouse
(Mus musculus)
Mammalia Rab19 33 16 34
  • 86.33 (n)
cow
(Bos Taurus)
Mammalia RAB19 33 34
  • 86.18 (n)
rat
(Rattus norvegicus)
Mammalia Rab19 33
  • 86.02 (n)
oppossum
(Monodelphis domestica)
Mammalia RAB19 34
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RAB19 34
  • 82 (a)
OneToOne
chicken
(Gallus gallus)
Aves RAB19 33 34
  • 74.92 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia rab19 33
  • 72.36 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC555645 33
  • 65.57 (n)
RAB19 34
  • 63 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Rab-RP3 34
  • 47 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea rab-19 34
  • 46 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 46 (a)
OneToMany
Species where no ortholog for RAB19 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RAB19 Gene

ENSEMBL:
Gene Tree for RAB19 (if available)
TreeFam:
Gene Tree for RAB19 (if available)

Paralogs for RAB19 Gene

genes like me logo Genes that share paralogs with RAB19: view

Variants for RAB19 Gene

Sequence variations from dbSNP and Humsavar for RAB19 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000182796 -- 140,419,430(+) C/T intron_variant
rs1000263715 -- 140,418,737(+) T/G intron_variant
rs1000401217 -- 140,418,524(+) C/T intron_variant
rs1000423119 -- 140,425,031(+) A/G intron_variant
rs1000612474 -- 140,415,105(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RAB19 Gene

Variant ID Type Subtype PubMed ID
nsv608500 CNV loss 21841781
nsv522190 CNV gain 19592680
nsv1132090 CNV deletion 24896259
nsv1022919 CNV gain 25217958
esv3615232 CNV loss 21293372
esv3542518 CNV deletion 23714750
esv2762706 CNV loss 21179565
esv2735212 CNV deletion 23290073

Variation tolerance for RAB19 Gene

Residual Variation Intolerance Score: 87.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.21; 62.10% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RAB19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAB19 Gene

Disorders for RAB19 Gene

Additional Disease Information for RAB19

No disorders were found for RAB19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB19 Gene

Publications for RAB19 Gene

  1. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 4 58
  2. Large-scale proteomics and phosphoproteomics of urinary exosomes. (PMID: 19056867) Gonzales PA … Knepper MA (Journal of the American Society of Nephrology : JASN 2009) 3 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  4. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 4 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RAB19 Gene

Sources for RAB19 Gene

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