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Aliases for RAB11B-AS1 Gene

Subcategory (RNA class) for RAB11B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for RAB11B-AS1 Gene

  • RAB11B Antisense RNA 1 2 3 5
  • RAB11B Antisense RNA 1 (Non-Protein Coding) 2 3
  • MIR4999 Host Gene 2
  • MIR4999 Host 3
  • MIR4999HG 3

External Ids for RAB11B-AS1 Gene

Previous GeneCards Identifiers for RAB11B-AS1 Gene

  • GC19M008441

Summaries for RAB11B-AS1 Gene

GeneCards Summary for RAB11B-AS1 Gene

RAB11B-AS1 (RAB11B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RAB11B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAB11B-AS1 Gene

Genomics for RAB11B-AS1 Gene

GeneHancer (GH) Regulatory Elements for RAB11B-AS1 Gene

Promoters and enhancers for RAB11B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J008361 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.2 +25.5 25531 7.1 SP1 ZNF148 POLR2A MLLT1 ZNF121 GTF2F1 NFIB ZSCAN21 ZNF24 MAFK ANGPTL4 HNRNPM ZNF317 XAB2 ZNF699 ZNF558 MAP2K7 ELAVL1 ZNF559 ZNF414
GH19J008388 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.3 -2.2 -2153 10.3 SP1 ELF3 CC2D1A ZFX CTCF MNT CBFA2T2 ZNF148 NKRF MLLT1 RAB11B HNRNPM ZNF699 XAB2 ELAVL1 ZNF558 ZNF317 MAP2K7 ZNF559 ENSG00000270614
GH19J008373 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.5 +16.4 16400 1.5 ELF3 CTCF MNT ZNF121 CEBPG RERE AHR TFE3 SP1 HNF1A RAB11B-AS1 MARCH2 ANGPTL4 MIR4999
GH19J007700 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.5 +686.3 686286 7.2 SP1 NKRF ZNF687 RELA CREM MLLT1 ZBED1 IKZF1 POLR2A BACH1 FCER2 HNRNPM ELAVL1 XAB2 MAP2K7 STXBP2 PEX11G CD209 CLEC4G RPL21P129
GH19J008379 Enhancer 0.6 Ensembl 12.4 +10.0 9991 1.8 CC2D1A MLLT1 GTF2F1 MTA3 POLR2A EHMT2 SUPT5H SMAD5 YY2 PRDM10 RAB11B-AS1 MARCH2 ANGPTL4 MIR4999
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RAB11B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RAB11B-AS1 Gene

Genomic Locations for RAB11B-AS1 Gene
chr19:8,374,373-8,390,691
(GRCh38/hg38)
Size:
16,319 bases
Orientation:
Minus strand
chr19:8,439,257-8,455,575
(GRCh37/hg19)
Size:
16,319 bases
Orientation:
Minus strand

Genomic View for RAB11B-AS1 Gene

Genes around RAB11B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAB11B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAB11B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAB11B-AS1 Gene

Proteins for RAB11B-AS1 Gene

Post-translational modifications for RAB11B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RAB11B-AS1 Gene

Domains & Families for RAB11B-AS1 Gene

Gene Families for RAB11B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RAB11B-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RAB11B-AS1 Gene

Function for RAB11B-AS1 Gene

Phenotypes From GWAS Catalog for RAB11B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RAB11B-AS1 Gene

Localization for RAB11B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RAB11B-AS1 Gene

Pathways & Interactions for RAB11B-AS1 Gene

PathCards logo

SuperPathways for RAB11B-AS1 Gene

No Data Available

Interacting Proteins for RAB11B-AS1 Gene

Gene Ontology (GO) - Biological Process for RAB11B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RAB11B-AS1 Gene

Drugs & Compounds for RAB11B-AS1 Gene

No Compound Related Data Available

Transcripts for RAB11B-AS1 Gene

mRNA/cDNA for RAB11B-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Unigene Clusters for RAB11B-AS1 Gene

RAB11B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAB11B-AS1 Gene

No ASD Table

Relevant External Links for RAB11B-AS1 Gene

GeneLoc Exon Structure for
RAB11B-AS1
ECgene alternative splicing isoforms for
RAB11B-AS1

Expression for RAB11B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RAB11B-AS1 Gene

SOURCE GeneReport for Unigene cluster for RAB11B-AS1 Gene:

Hs.637720
genes like me logo Genes that share expression patterns with RAB11B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RAB11B-AS1 Gene

Orthologs for RAB11B-AS1 Gene

Evolution for RAB11B-AS1 Gene

ENSEMBL:
Gene Tree for RAB11B-AS1 (if available)
TreeFam:
Gene Tree for RAB11B-AS1 (if available)

No data available for Orthologs for RAB11B-AS1 Gene

Paralogs for RAB11B-AS1 Gene

No data available for Paralogs for RAB11B-AS1 Gene

Variants for RAB11B-AS1 Gene

Sequence variations from dbSNP and Humsavar for RAB11B-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000080334 -- 8,390,701(-) G/A upstream_transcript_variant
rs1000346951 -- 8,389,922(-) A/T intron_variant
rs1000428420 -- 8,385,980(-) C/A/T intron_variant
rs1000538676 -- 8,381,824(-) C/T intron_variant
rs1000591124 -- 8,381,545(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RAB11B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv6257n54 CNV gain 21841781
esv2675709 CNV deletion 23128226
esv28519 CNV loss 19812545
esv3643614 CNV gain 21293372
esv3643616 CNV gain 21293372

Additional Variant Information for RAB11B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RAB11B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RAB11B-AS1 Gene

Disorders for RAB11B-AS1 Gene

Additional Disease Information for RAB11B-AS1

No disorders were found for RAB11B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RAB11B-AS1 Gene

Publications for RAB11B-AS1 Gene

  1. Long non-coding RNA RAB11B-AS1 prevents osteosarcoma development and progression via its natural antisense transcript RAB11B. (PMID: 29928484) Chen Z … Li Q (Oncotarget 2018) 2 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for RAB11B-AS1 Gene

Sources for RAB11B-AS1 Gene

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