Aliases for PXN-AS1 Gene

Subcategory (RNA class) for PXN-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PXN-AS1 Gene

  • PXN Antisense RNA 1 2 3 5
  • PXN-AS1 2 5 165
  • PXN Antisense RNA 1 (Non-Protein Coding) 2 3
  • EyeLinc4 2 3
  • NONHSAG012505.2 91
  • HSALNG0094500 164

External Ids for PXN-AS1 Gene

Previous GeneCards Identifiers for PXN-AS1 Gene

  • GC12P120641

Summaries for PXN-AS1 Gene

GeneCards Summary for PXN-AS1 Gene

PXN-AS1 (PXN Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PXN-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PXN-AS1 Gene

Genomics for PXN-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PXN-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PXN-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PXN-AS1 Gene

Genomic Locations for PXN-AS1 Gene
chr12:120,194,917-120,213,231
(GRCh38/hg38)
Size:
18,315 bases
Orientation:
Plus strand
chr12:120,639,094-120,650,941
(GRCh37/hg19)
Size:
11,848 bases
Orientation:
Plus strand

Genomic View for PXN-AS1 Gene

Genes around PXN-AS1 on UCSC Golden Path with GeneCards custom track
PXN-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PXN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PXN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PXN-AS1 Gene

Proteins for PXN-AS1 Gene

Post-translational modifications for PXN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PXN-AS1 Gene

Domains & Families for PXN-AS1 Gene

Gene Families for PXN-AS1 Gene

genes like me logo Genes that share domains with PXN-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PXN-AS1 Gene

Function for PXN-AS1 Gene

Phenotypes From GWAS Catalog for PXN-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PXN-AS1 Gene

Localization for PXN-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PXN-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PXN-AS1 Gene

Pathways & Interactions for PXN-AS1 Gene

PathCards logo

SuperPathways for PXN-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PXN-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PXN-AS1 Gene

Drugs & Compounds for PXN-AS1 Gene

No Compound Related Data Available

Transcripts for PXN-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PXN-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000070006_9606 lncRNA 707 4

Ensembl: ENST00000542314 (view in UCSC) ,

LncBook: HSALNT0195918,

LNCipedia: PXN-AS1:4,

NONCODE: NONHSAT031116.2,

URS0000552EB2_9606 lncRNA 508 4

Ensembl: ENST00000538804 (view in UCSC) ,

LncBook: HSALNT0195925,

LNCipedia: PXN-AS1:6,

NONCODE: NONHSAT031117.2,

URS0000553EC2_9606 lncRNA 1170 3

Ensembl: ENST00000535200 (view in UCSC) ,

LncBook: HSALNT0195929,

NONCODE: NONHSAT031120.2,

URS000075E544_9606 lncRNA 763 2

HGNC: 44123,

RefSeq: NR_038924,

URS0000EECDA6_9606 lncRNA 2525 1

Ensembl: ENST00000667017 (view in UCSC) ,

PXN-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PXN-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PXN-AS1 Gene

No ASD Table

Relevant External Links for PXN-AS1 Gene

GeneLoc Exon Structure for
PXN-AS1

Expression for PXN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PXN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PXN-AS1 Gene

This gene is overexpressed in Whole Blood (x8.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PXN-AS1

SOURCE GeneReport for Unigene cluster for PXN-AS1 Gene:

Hs.569205
genes like me logo Genes that share expression patterns with PXN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PXN-AS1 Gene

Orthologs for PXN-AS1 Gene

Evolution for PXN-AS1 Gene

ENSEMBL:
Gene Tree for PXN-AS1 (if available)
TreeFam:
Gene Tree for PXN-AS1 (if available)

No data available for Orthologs for PXN-AS1 Gene

Paralogs for PXN-AS1 Gene

No data available for Paralogs for PXN-AS1 Gene

Variants for PXN-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PXN-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
715656 Benign: not provided 120,212,569(+) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for PXN-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PXN-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv519657 CNV loss 19592680
nsv560433 CNV loss 21841781
nsv832530 CNV loss 17160897

Additional Variant Information for PXN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PXN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PXN-AS1 Gene

Disorders for PXN-AS1 Gene

No disorders were found for PXN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PXN-AS1 Gene

Publications for PXN-AS1 Gene

  1. Long noncoding RNA PXN-AS1-L promotes the malignancy of nasopharyngeal carcinoma cells via upregulation of SAPCD2. (PMID: 31173488) Jia X … Liu H (Cancer medicine 2019) 2 3
  2. Long non-coding RNA PXN-AS1 suppresses pancreatic cancer progression by acting as a competing endogenous RNA of miR-3064 to upregulate PIP4K2B expression. (PMID: 31488171) Yan J … Zhou X (Journal of experimental & clinical cancer research : CR 2019) 3
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for PXN-AS1 Gene

Sources for PXN-AS1 Gene