Aliases for PXN-AS1 Gene

Subcategory (RNA class) for PXN-AS1 Gene


Quality Score for this RNA gene is


Aliases for PXN-AS1 Gene

  • PXN Antisense RNA 1 2 3 5
  • PXN Antisense RNA 1 (Non-Protein Coding) 2 3
  • PXN-AS1 2 170
  • NONHSAG012505 94
  • HSALNG0094500 169
  • EyeLinc4 3

External Ids for PXN-AS1 Gene

Previous GeneCards Identifiers for PXN-AS1 Gene

  • GC12P120641

Summaries for PXN-AS1 Gene

GeneCards Summary for PXN-AS1 Gene

PXN-AS1 (PXN Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PXN-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PXN-AS1 Gene

Genomics for PXN-AS1 Gene

GeneHancer (GH) Regulatory Elements for PXN-AS1 Gene

Promoters and enhancers for PXN-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PXN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PXN-AS1 Gene

Genomic Locations for PXN-AS1 Gene
18,315 bases
Plus strand
11,848 bases
Plus strand

Genomic View for PXN-AS1 Gene

Genes around PXN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PXN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PXN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PXN-AS1 Gene

Proteins for PXN-AS1 Gene

Post-translational modifications for PXN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PXN-AS1 Gene

Domains & Families for PXN-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PXN-AS1 Gene

Function for PXN-AS1 Gene

Phenotypes From GWAS Catalog for PXN-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PXN-AS1 Gene

Localization for PXN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PXN-AS1 Gene

Pathways & Interactions for PXN-AS1 Gene

PathCards logo

SuperPathways for PXN-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PXN-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for PXN-AS1 Gene

Drugs & Compounds for PXN-AS1 Gene

No Compound Related Data Available

Transcripts for PXN-AS1 Gene

mRNA/cDNA for PXN-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) NONCODE transcripts :
(18) RNACentral transcripts :
(12) LncBook transcripts :
(10) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PXN-AS1 Gene

No ASD Table

Relevant External Links for PXN-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for PXN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PXN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PXN-AS1 Gene

This gene is overexpressed in Whole Blood (x8.3).

SOURCE GeneReport for Unigene cluster for PXN-AS1 Gene:

genes like me logo Genes that share expression patterns with PXN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PXN-AS1 Gene

Orthologs for PXN-AS1 Gene

Evolution for PXN-AS1 Gene

Gene Tree for PXN-AS1 (if available)
Gene Tree for PXN-AS1 (if available)

No data available for Orthologs for PXN-AS1 Gene

Paralogs for PXN-AS1 Gene

No data available for Paralogs for PXN-AS1 Gene

Variants for PXN-AS1 Gene

Sequence variations from dbSNP and Humsavar for PXN-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000127868 -- 120,206,795(+) T/C intron_variant
rs1000212568 -- 120,211,930(+) A/G intron_variant
rs1000323838 -- 120,209,682(+) C/T intron_variant
rs1000683619 -- 120,201,039(+) T/G upstream_transcript_variant
rs1000772079 -- 120,205,234(+) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PXN-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv519657 CNV loss 19592680
nsv560433 CNV loss 21841781
nsv832530 CNV loss 17160897

Additional Variant Information for PXN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PXN-AS1 Gene

Disorders for PXN-AS1 Gene

Additional Disease Information for PXN-AS1

No disorders were found for PXN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PXN-AS1 Gene

Publications for PXN-AS1 Gene

  1. Long noncoding RNA PXN-AS1-L promotes the malignancy of nasopharyngeal carcinoma cells via upregulation of SAPCD2. (PMID: 31173488) Jia X … Liu H (Cancer medicine 2019) 2 3 56
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 56

Products for PXN-AS1 Gene

Sources for PXN-AS1 Gene