Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PWAR1 Gene

Subcategory (RNA class) for PWAR1 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for PWAR1 Gene

  • Prader Willi/Angelman Region RNA 1 2 3 5
  • Prader Willi/Angelman Region 1 2
  • D15S227E 3
  • PAR-1 3
  • PAR1 3

External Ids for PWAR1 Gene

ORGUL Members for PWAR1 Gene

Previous GeneCards Identifiers for PWAR1 Gene

  • GC15P025578
  • GC15P025709

Summaries for PWAR1 Gene

GeneCards Summary for PWAR1 Gene

PWAR1 (Prader Willi/Angelman Region RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PWAR1 include Prader-Willi Syndrome.

Gene Wiki entry for PWAR1 Gene

Additional gene information for PWAR1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PWAR1 Gene

Genomics for PWAR1 Gene

GeneHancer (GH) Regulatory Elements for PWAR1 Gene

Promoters and enhancers for PWAR1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J025134 Enhancer 0.4 ENCODE 650.7 -0.9 -873 0.2 CTCF POLR2A PWAR1 SNORD116-29 SNORD116-30 SNHG14 SNORD115-1 SNORD115-2 ENSG00000212428 SNORD116-27 SNORD116-26 SNORD116-25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PWAR1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PWAR1 Gene

Genomic Locations for PWAR1 Gene
chr15:25,135,642-25,138,055
(GRCh38/hg38)
Size:
2,414 bases
Orientation:
Plus strand
chr15:25,380,789-25,383,200
(GRCh37/hg19)
Size:
2,412 bases
Orientation:
Plus strand

Genomic View for PWAR1 Gene

Genes around PWAR1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PWAR1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PWAR1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PWAR1 Gene

Proteins for PWAR1 Gene

Post-translational modifications for PWAR1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PWAR1 Gene

Domains & Families for PWAR1 Gene

Gene Families for PWAR1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PWAR1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PWAR1 Gene

Function for PWAR1 Gene

Phenotypes From GWAS Catalog for PWAR1 Gene

Human Phenotype Ontology for PWAR1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PWAR1 Gene

Localization for PWAR1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PWAR1 Gene

Pathways & Interactions for PWAR1 Gene

SuperPathways for PWAR1 Gene

No Data Available

Interacting Proteins for PWAR1 Gene

Gene Ontology (GO) - Biological Process for PWAR1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PWAR1 Gene

Drugs & Compounds for PWAR1 Gene

No Compound Related Data Available

Transcripts for PWAR1 Gene

mRNA/cDNA for PWAR1 Gene

(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PWAR1 Gene

No ASD Table

Relevant External Links for PWAR1 Gene

GeneLoc Exon Structure for
PWAR1
ECgene alternative splicing isoforms for
PWAR1

Expression for PWAR1 Gene

NURSA nuclear receptor signaling pathways regulating expression of PWAR1 Gene:

PWAR1
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PWAR1 Gene

Orthologs for PWAR1 Gene

Evolution for PWAR1 Gene

ENSEMBL:
Gene Tree for PWAR1 (if available)
TreeFam:
Gene Tree for PWAR1 (if available)

No data available for Orthologs for PWAR1 Gene

Paralogs for PWAR1 Gene

No data available for Paralogs for PWAR1 Gene

Variants for PWAR1 Gene

Sequence variations from dbSNP and Humsavar for PWAR1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000660417 -- 25,134,301(+) G/A upstream_transcript_variant
rs1000849963 -- 25,134,279(+) C/T upstream_transcript_variant
rs1000925228 -- 25,134,001(+) G/A upstream_transcript_variant
rs1001524741 -- 25,136,734(+) A/G non_coding_transcript_variant
rs1001852136 -- 25,135,553(+) T/C upstream_transcript_variant

Additional Variant Information for PWAR1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PWAR1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PWAR1 Gene

Disorders for PWAR1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PWAR1 Gene - From: GTR and GeneCards

Disorder Aliases PubMed IDs
prader-willi syndrome
  • pws
- elite association - COSMIC cancer census association via MalaCards
Search PWAR1 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for PWAR1

genes like me logo Genes that share disorders with PWAR1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PWAR1 Gene

Publications for PWAR1 Gene

  1. Integrated YAC contig map of the Prader-Willi/Angelman region on chromosome 15q11-q13 with average STS spacing of 35 kb. (PMID: 9477342) Christian SL … Ledbetter DH (Genome research 1998) 2 3 58
  2. Deletions of a differentially methylated CpG island at the SNRPN gene define a putative imprinting control region. (PMID: 7987392) Sutcliffe JS … Beaudet AL (Nature genetics 1994) 2 3 58
  3. Platelet thrombin receptor antagonism and atherothrombosis. (PMID: 19948715) Angiolillo DJ … Goto S (European heart journal 2010) 22 58
  4. Extracellular osmolarity modulates G protein-coupled receptor-dependent ATP release from 1321N1 astrocytoma cells. (PMID: 19907018) Blum AE … Dubyak GR (American journal of physiology. Cell physiology 2010) 22 58
  5. Regulation of PAR-1 in patients undergoing percutaneous coronary intervention: effects of unfractionated heparin and bivalirudin. (PMID: 19468011) Eslam RB … Panzer S (European heart journal 2009) 22 58

Products for PWAR1 Gene

Sources for PWAR1 Gene

Content
Loading form....