Aliases for PTPRVP Gene

Aliases for PTPRVP Gene

  • Protein Tyrosine Phosphatase Receptor Type V, Pseudogene 2 3 5
  • OST-PTP 3
  • PTPRV 3
  • ESP 3

External Ids for PTPRVP Gene

Previous HGNC Symbols for PTPRVP Gene

  • PTPRV

Previous GeneCards Identifiers for PTPRVP Gene

  • GC01P202137
  • GC01P173302

Summaries for PTPRVP Gene

GeneCards Summary for PTPRVP Gene

PTPRVP (Protein Tyrosine Phosphatase Receptor Type V, Pseudogene) is a Pseudogene.

Additional gene information for PTPRVP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTPRVP Gene

Genomics for PTPRVP Gene

GeneHancer (GH) Regulatory Elements for PTPRVP Gene

Promoters and enhancers for PTPRVP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J202167 Enhancer 0.5 ENCODE dbSUPER 760.3 -0.7 -723 0.2 CEBPB TAL1 PTPRVP PTPN7
GH01J202168 Enhancer 0.4 CraniofacialAtlas 760.4 -0.1 -78 1 POLR2A RCOR1 NFIC PTPRVP PTPN7
GH01J202130 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 23.7 -36.4 -36350 4.2 SREBF1 ZNF217 MYC MAX ZNF121 MNT MTA3 NCOA3 HDGF CREB1 lnc-LGR6-2 lnc-LGR6-8 PTPRVP ELF3-AS1 RNPEP KDM5B HNRNPA1P59 ELF3 ENSG00000249007 ENSG00000236439
GH01J202142 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 13.5 -24.0 -23950 3.4 ZBTB40 SREBF1 FOXA1 RBPJ SMARCE1 POLR2A NR2F1 NR2F6 MIXL1 HLF ARL8A lnc-GPR37L1-7 ENSG00000236390 ENSG00000234761 PTPRVP GPR37L1 RF00017-441
GH01J202157 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.5 -5.9 -5938 8.9 SP1 ZBTB40 SMARCE1 NR2F6 MYC ETV6 RELA L3MBTL2 RBM39 MAX PTPN7 lnc-ARL8A-1 RNPEP IPO9 KDM5B HNRNPA1P59 IPO9-AS1 ELF3-AS1 ENSG00000236439 LMOD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTPRVP on UCSC Golden Path with GeneCards custom track

Genomic Locations for PTPRVP Gene

Genomic Locations for PTPRVP Gene
chr1:202,168,051-202,189,455
(GRCh38/hg38)
Size:
21,405 bases
Orientation:
Plus strand
chr1:202,137,179-202,158,583
(GRCh37/hg19)
Size:
21,405 bases
Orientation:
Plus strand

Genomic View for PTPRVP Gene

Genes around PTPRVP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTPRVP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTPRVP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTPRVP Gene

Proteins for PTPRVP Gene

Post-translational modifications for PTPRVP Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTPRVP Gene

Domains & Families for PTPRVP Gene

Gene Families for PTPRVP Gene

genes like me logo Genes that share domains with PTPRVP: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTPRVP Gene

Function for PTPRVP Gene

Phenotypes From GWAS Catalog for PTPRVP Gene

genes like me logo Genes that share phenotypes with PTPRVP: view

Animal Model Products

  • Taconic Biosciences Mouse Models for PTPRVP

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTPRVP Gene

Localization for PTPRVP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTPRVP Gene

Pathways & Interactions for PTPRVP Gene

PathCards logo

SuperPathways for PTPRVP Gene

No Data Available

Gene Ontology (GO) - Biological Process for PTPRVP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PTPRVP Gene

Drugs & Compounds for PTPRVP Gene

No Compound Related Data Available

Transcripts for PTPRVP Gene

mRNA/cDNA for PTPRVP Gene

(4) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PTPRVP Gene

No ASD Table

Relevant External Links for PTPRVP Gene

GeneLoc Exon Structure for
PTPRVP
ECgene alternative splicing isoforms for
PTPRVP

Expression for PTPRVP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PTPRVP Gene

mRNA differential expression in normal tissues according to GTEx for PTPRVP Gene

This gene is overexpressed in Testis (x13.6).

NURSA nuclear receptor signaling pathways regulating expression of PTPRVP Gene:

PTPRVP

SOURCE GeneReport for Unigene cluster for PTPRVP Gene:

Hs.523870
genes like me logo Genes that share expression patterns with PTPRVP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTPRVP Gene

Orthologs for PTPRVP Gene

Evolution for PTPRVP Gene

ENSEMBL:
Gene Tree for PTPRVP (if available)
TreeFam:
Gene Tree for PTPRVP (if available)

No data available for Orthologs for PTPRVP Gene

Paralogs for PTPRVP Gene

No data available for Paralogs for PTPRVP Gene

Variants for PTPRVP Gene

Sequence variations from dbSNP and Humsavar for PTPRVP Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000194483 -- 202,174,769(+) C/T intron_variant
rs1000207228 -- 202,169,011(+) C/T intron_variant
rs1000285046 -- 202,174,226(+) G/A intron_variant
rs1000339912 -- 202,179,916(+) C/T intron_variant
rs1000358290 -- 202,177,898(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PTPRVP Gene

Variant ID Type Subtype PubMed ID
esv2666757 CNV deletion 23128226
esv3588576 CNV loss 21293372
esv3891059 CNV gain 25118596
nsv1010102 CNV gain 25217958
nsv1144426 CNV deletion 24896259
nsv467972 CNV loss 19166990
nsv522841 CNV gain 19592680
nsv548999 CNV loss 21841781
nsv946577 CNV duplication 23825009
nsv952638 CNV deletion 24416366

Additional Variant Information for PTPRVP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTPRVP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PTPRVP Gene

Disorders for PTPRVP Gene

Additional Disease Information for PTPRVP

No disorders were found for PTPRVP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PTPRVP Gene

Publications for PTPRVP Gene

  1. Cloning of hOST-PTP: the only example of a protein-tyrosine-phosphatase the function of which has been lost between rodent and human. (PMID: 15358244) Cousin W … Peraldi P (Biochemical and biophysical research communications 2004) 2 3 56
  2. Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene. (PMID: 25456346) Nievergelt CM … Baker DG (Psychoneuroendocrinology 2015) 3 56
  3. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3 56
  4. Molecular study of the genus Astraeus. (PMID: 17360168) Phosri C … Watling R (Mycological research 2007) 3 56
  5. Endocrine regulation of energy metabolism by the skeleton. (PMID: 17693256) Lee NK … Karsenty G (Cell 2007) 3 56

Products for PTPRVP Gene

Sources for PTPRVP Gene