Aliases for PTPRT-AS1 Gene

Subcategory (RNA class) for PTPRT-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PTPRT-AS1 Gene

  • PTPRT Antisense RNA 1 2 3
  • Novel Transcript 5
  • NONHSAG031805.2 91
  • HSALNG0130209 164
  • Lnc-SRSF6-2 165
  • AL031676.1 5

External Ids for PTPRT-AS1 Gene

Summaries for PTPRT-AS1 Gene

GeneCards Summary for PTPRT-AS1 Gene

PTPRT-AS1 (PTPRT Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PTPRT-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTPRT-AS1 Gene

Genomics for PTPRT-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PTPRT-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J042936 Enhancer 0.5 Ensembl 11.5 -32.1 -32142 1.2 CREB1 ATF7 ATF2 ATF3 JUND HLF JUN PTPRT-AS1 PTPRT RF00017-3593 LOC105372623 lnc-GTSF1L-8
GH20J042978 Enhancer 0.4 Ensembl 0.4 +10.0 9958 0.2 RFX1 ZNF740 ESRRA PTPRT-AS1 piR-51221-003 PTPRT
GH20J042986 Enhancer 0.4 Ensembl 0.4 +17.8 17757 0.2 RXRB CREB1 THRB JUN PTPRT-AS1 piR-51221-003 PTPRT
GH20J043007 Enhancer 0.6 Ensembl 0.3 +39.1 39058 0.4 NFE2 ZNF316 MAFF MAFK MAFG NR2F2 NFE2L2 BACH1 ESRRA EMSY piR-51221-003 PTPRT-AS1 PTPRT
GH20J042979 Enhancer 0.3 Ensembl 0.4 +11.6 11558 1.8 USF1 PTPRT-AS1 piR-51221-003 PTPRT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTPRT-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PTPRT-AS1 Gene

Genomic Locations for PTPRT-AS1 Gene
chr20:42,968,743-42,971,493
(GRCh38/hg38)
Size:
2,751 bases
Orientation:
Plus strand
chr20:41,597,383-41,600,132
(GRCh37/hg19)
Size:
2,750 bases
Orientation:
Plus strand

Genomic View for PTPRT-AS1 Gene

Genes around PTPRT-AS1 on UCSC Golden Path with GeneCards custom track
PTPRT-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PTPRT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTPRT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTPRT-AS1 Gene

Proteins for PTPRT-AS1 Gene

Post-translational modifications for PTPRT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTPRT-AS1 Gene

Domains & Families for PTPRT-AS1 Gene

Gene Families for PTPRT-AS1 Gene

genes like me logo Genes that share domains with PTPRT-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTPRT-AS1 Gene

Function for PTPRT-AS1 Gene

Phenotypes From GWAS Catalog for PTPRT-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTPRT-AS1 Gene

Localization for PTPRT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTPRT-AS1 Gene

Pathways & Interactions for PTPRT-AS1 Gene

PathCards logo

SuperPathways for PTPRT-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PTPRT-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PTPRT-AS1 Gene

Drugs & Compounds for PTPRT-AS1 Gene

No Compound Related Data Available

Transcripts for PTPRT-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PTPRT-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000014A2A5_9606 lncRNA 1586 3

Ensembl: ENST00000412519 (view in UCSC) ,

LNCipedia: lnc-SRSF6-2:1,

NONCODE: NONHSAT079807.2,

URS0000BC45EC_9606 lncRNA 1586 1

RefSeq: NR_149017,

URS00009C17BD_9606 lncRNA 1586 2

LncBook: HSALNT0267465,

NONCODE: NONHSAT188777.1,

URS00009B5AF4_9606 lncRNA 1768 1

NONCODE: NONHSAT188778.1,

PTPRT-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PTPRT-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PTPRT-AS1 Gene

No ASD Table

Relevant External Links for PTPRT-AS1 Gene

GeneLoc Exon Structure for
PTPRT-AS1

Expression for PTPRT-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PTPRT-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTPRT-AS1 Gene

Orthologs for PTPRT-AS1 Gene

Evolution for PTPRT-AS1 Gene

ENSEMBL:
Gene Tree for PTPRT-AS1 (if available)
TreeFam:
Gene Tree for PTPRT-AS1 (if available)

No data available for Orthologs for PTPRT-AS1 Gene

Paralogs for PTPRT-AS1 Gene

No data available for Paralogs for PTPRT-AS1 Gene

Variants for PTPRT-AS1 Gene

Additional dbSNP identifiers (rs#s) for PTPRT-AS1 Gene

Additional Variant Information for PTPRT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTPRT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PTPRT-AS1 Gene

Disorders for PTPRT-AS1 Gene

No disorders were found for PTPRT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PTPRT-AS1 Gene

Publications for PTPRT-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for PTPRT-AS1 Gene

Products for PTPRT-AS1 Gene

Sources for PTPRT-AS1 Gene