Aliases for PTPRG-AS1 Gene

Subcategory (RNA class) for PTPRG-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PTPRG-AS1 Gene

  • PTPRG Antisense RNA 1 2 3 5
  • PTPRG-AS1 2 168
  • HSALNG0026508 167
  • NONHSAG035305 92

External Ids for PTPRG-AS1 Gene

Summaries for PTPRG-AS1 Gene

GeneCards Summary for PTPRG-AS1 Gene

PTPRG-AS1 (PTPRG Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with PTPRG-AS1 include Breast Cancer.

Additional gene information for PTPRG-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTPRG-AS1 Gene

Genomics for PTPRG-AS1 Gene

GeneHancer (GH) Regulatory Elements for PTPRG-AS1 Gene

Promoters and enhancers for PTPRG-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J062280 Enhancer 0.5 Ensembl 6.6 +88.1 88106 1 FEZF1 PRDM4 ZSCAN21 ZXDB SMARCA5 CEBPG ZBTB44 PTPRG-AS1 C3orf14 piR-48275 PTPRG
GH03J062318 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 0.2 +50.3 50288 1.8 LARP7 ZNF217 USF1 PHF8 JUND ZFX ZNF10 REST CLOCK ZBTB26 C3orf14 NONHSAG035306.2 PTPRG-AS1
GH03J062373 Promoter 0.7 EPDnew 0.7 -3.7 -3689 0.1 ZBTB26 ZNF335 MAZ ZNF398 RNF2 SUZ12 EZH2 PRDM10 FEZF2 PTPRG-AS1
GH03J062375 Promoter 0.6 EPDnew 0.7 -4.2 -4164 0.1 EZH2 CBX8 RNF2 SUZ12 CTBP2 FEZF2 PTPRG-AS1
GH03J062365 Enhancer 0.6 VISTA 0.7 +3.9 3859 1 RNF2 EGR1 EZH2 SUZ12 PTPRG-AS1 NONHSAG035306.2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTPRG-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PTPRG-AS1 Gene

Genomic Locations for PTPRG-AS1 Gene
chr3:62,221,249-62,369,406
(GRCh38/hg38)
Size:
148,158 bases
Orientation:
Minus strand
chr3:62,246,540-62,355,005
(GRCh37/hg19)
Size:
108,466 bases
Orientation:
Minus strand

Genomic View for PTPRG-AS1 Gene

Genes around PTPRG-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTPRG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTPRG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTPRG-AS1 Gene

Proteins for PTPRG-AS1 Gene

Post-translational modifications for PTPRG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTPRG-AS1 Gene

Domains & Families for PTPRG-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTPRG-AS1 Gene

Function for PTPRG-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTPRG-AS1 Gene

Localization for PTPRG-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PTPRG-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTPRG-AS1 Gene

Pathways & Interactions for PTPRG-AS1 Gene

PathCards logo

SuperPathways for PTPRG-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PTPRG-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PTPRG-AS1 Gene

Drugs & Compounds for PTPRG-AS1 Gene

No Compound Related Data Available

Transcripts for PTPRG-AS1 Gene

mRNA/cDNA for PTPRG-AS1 Gene

47 RNACentral transcripts :
3 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
26 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
11 NONCODE transcripts :
10 LncBook transcripts :
30 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PTPRG-AS1 Gene

No ASD Table

Relevant External Links for PTPRG-AS1 Gene

GeneLoc Exon Structure for
PTPRG-AS1

Expression for PTPRG-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PTPRG-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PTPRG-AS1

SOURCE GeneReport for Unigene cluster for PTPRG-AS1 Gene:

Hs.656620
genes like me logo Genes that share expression patterns with PTPRG-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTPRG-AS1 Gene

Orthologs for PTPRG-AS1 Gene

Evolution for PTPRG-AS1 Gene

ENSEMBL:
Gene Tree for PTPRG-AS1 (if available)
TreeFam:
Gene Tree for PTPRG-AS1 (if available)

No data available for Orthologs for PTPRG-AS1 Gene

Paralogs for PTPRG-AS1 Gene

No data available for Paralogs for PTPRG-AS1 Gene

Variants for PTPRG-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PTPRG-AS1 Gene

SNP ID Clinical significance and condition Chr 03 pos Variation AA Info Type
713937 Benign: not provided 62,273,025(-) G/A MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for PTPRG-AS1 Gene

Additional Variant Information for PTPRG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTPRG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PTPRG-AS1 Gene

Disorders for PTPRG-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PTPRG-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PTPRG-AS1

genes like me logo Genes that share disorders with PTPRG-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PTPRG-AS1 Gene

Publications for PTPRG-AS1 Gene

  1. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W … Jiao S (Scientific reports 2014) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for PTPRG-AS1 Gene

Sources for PTPRG-AS1 Gene