Aliases for PTPN5 Gene

Aliases for PTPN5 Gene

  • Protein Tyrosine Phosphatase Non-Receptor Type 5 2 3 5
  • Protein Tyrosine Phosphatase, Non-Receptor Type 5 (Striatum-Enriched) 2 3
  • Tyrosine-Protein Phosphatase Non-Receptor Type 5 3 4
  • Striatum-Enriched Protein-Tyrosine Phosphatase 3 4
  • Striatal-Enriched Protein Tyrosine Phosphatase 2 3
  • Neural-Specific Protein-Tyrosine Phosphatase 3 4
  • EC 3.1.3.48 4 54
  • STEP 3 4
  • Protein-Tyrosine Phosphatase Striatum-Enriched 3
  • PTPSTEP 3
  • STEP61 3

External Ids for PTPN5 Gene

Previous GeneCards Identifiers for PTPN5 Gene

  • GC11U990112
  • GC11M019694
  • GC11M018788
  • GC11M018713
  • GC11M018706
  • GC11M018434
  • GC11M018749

Summaries for PTPN5 Gene

GeneCards Summary for PTPN5 Gene

PTPN5 (Protein Tyrosine Phosphatase Non-Receptor Type 5) is a Protein Coding gene. Diseases associated with PTPN5 include Reflex Epilepsy and Acute Stress Disorder. Among its related pathways are MAPK signaling pathway and Signal transduction_Erk Interactions- Inhibition of Erk. Gene Ontology (GO) annotations related to this gene include phosphatase activity and phosphotyrosine residue binding. An important paralog of this gene is PTPRR.

UniProtKB/Swiss-Prot Summary for PTPN5 Gene

  • May regulate the activity of several effector molecules involved in synaptic plasticity and neuronal cell survival, including MAPKs, Src family kinases and NMDA receptors.

Gene Wiki entry for PTPN5 Gene

Additional gene information for PTPN5 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTPN5 Gene

Genomics for PTPN5 Gene

GeneHancer (GH) Regulatory Elements for PTPN5 Gene

Promoters and enhancers for PTPN5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J018790 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE CraniofacialAtlas 766.6 +1.0 994 1.7 ZBTB8A POLR2A SP2 ZFHX2 ZNF335 SP3 PTPN5 piR-57133-070
GH11J019236 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.5 -448.0 -447999 9.1 E2F8 ZBTB40 SP1 RBPJ POLR2A TCF7L2 HDAC2 FOS ZNF217 HCFC1 E2F8 PTPN5 GTF2H1 ZDHHC13 ENSG00000255160 lnc-CSRP3-1 ENSG00000255308-001
GH11J018768 Enhancer 0.9 Ensembl dbSUPER 11.7 +24.0 24020 1 SP1 ETV6 RELA ZNF687 CREM ZBED1 IKZF1 BACH1 TRIM22 IKZF2 piR-57133-070 PTPN5 IGSF22 ENSG00000254966 LDHA SERGEF GTF2H1 ENSG00000286998
GH11J018779 Enhancer 0.3 Ensembl 29.6 +12.5 12498 1.2 POLR2A PTPN5 SAA2 piR-57133-070
GH11J018804 Enhancer 0.3 Ensembl 22.2 -12.1 -12080 0.4 ZNF384 CEBPG PTPN5 RF00017-883 piR-32791-001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTPN5 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the PTPN5 gene promoter:
  • C/EBPalpha
  • CHOP-10
  • Nkx2-5
  • POU2F1
  • POU2F1a
  • RP58
  • TBP

Genomic Locations for PTPN5 Gene

Genomic Locations for PTPN5 Gene
chr11:18,727,928-18,792,721
(GRCh38/hg38)
Size:
64,794 bases
Orientation:
Minus strand
chr11:18,749,475-18,814,268
(GRCh37/hg19)
Size:
64,794 bases
Orientation:
Minus strand

Genomic View for PTPN5 Gene

Genes around PTPN5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTPN5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTPN5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTPN5 Gene

Proteins for PTPN5 Gene

  • Protein details for PTPN5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P54829-PTN5_HUMAN
    Recommended name:
    Tyrosine-protein phosphatase non-receptor type 5
    Protein Accession:
    P54829
    Secondary Accessions:
    • B3KXG7
    • B7Z386
    • B7ZAF5
    • D3DQY7
    • Q6P1Z2
    • Q8N2A1
    • Q8NDP8

    Protein attributes for PTPN5 Gene

    Size:
    565 amino acids
    Molecular mass:
    63538 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for PTPN5 Gene

    Alternative splice isoforms for PTPN5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PTPN5 Gene

Selected DME Specific Peptides for PTPN5 Gene

P54829:
  • YIATQGP
  • PIIVHCS
  • DFWRMVW
  • RYKTILPNP
  • GRTGCFI
  • HCSAGIGR
  • LQERRGS

Post-translational modifications for PTPN5 Gene

  • Phosphorylation at Ser-245 by PKA deactivates PTPN5. Phosphorylation at Thr-255 and Ser-268 by MAPKs stabilizes the phosphatase, dephosphorylation of these sites results in ubiquitin-mediated degradation of the active phosphatase.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Domains & Families for PTPN5 Gene

Gene Families for PTPN5 Gene

HGNC:
Human Protein Atlas (HPA):
  • Enzymes
  • Plasma proteins
  • Predicted intracellular proteins
  • Predicted membrane proteins

Suggested Antigen Peptide Sequences for PTPN5 Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ45381 fis, clone BRHIP3021019, highly similar to Homo sapiens protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) (PTPN5), transcript variant 3, mRNA (B3KXG7_HUMAN)
  • cDNA, FLJ79169, highly similar to Tyrosine-protein phosphatase non-receptor type5 (EC 3.1.3.48) (B7ZAF5_HUMAN)
  • Striatum-enriched protein-tyrosine phosphatase (PTN5_HUMAN)
  • PTPN5 protein (Q86TL3_HUMAN)
  • PTPN5 protein (Q86TL6_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P54829

UniProtKB/Swiss-Prot:

PTN5_HUMAN :
  • Belongs to the protein-tyrosine phosphatase family. Non-receptor class subfamily.
Family:
  • Belongs to the protein-tyrosine phosphatase family. Non-receptor class subfamily.
genes like me logo Genes that share domains with PTPN5: view

Function for PTPN5 Gene

Molecular function for PTPN5 Gene

UniProtKB/Swiss-Prot Function:
May regulate the activity of several effector molecules involved in synaptic plasticity and neuronal cell survival, including MAPKs, Src family kinases and NMDA receptors.
UniProtKB/Swiss-Prot CatalyticActivity:
Reaction=H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate; Xref=Rhea:RHEA:10684, Rhea:RHEA-COMP:10136, Rhea:RHEA-COMP:10137, ChEBI:CHEBI:15377, ChEBI:CHEBI:43474, ChEBI:CHEBI:46858, ChEBI:CHEBI:82620; EC=3.1.3.48; Evidence=. ;.
GENATLAS Biochemistry:
protein tyrosine phosphatase,non receptor type 5,homologous to murine striatum enriched phosphatase

Enzyme Numbers (IUBMB) for PTPN5 Gene

Phenotypes From GWAS Catalog for PTPN5 Gene

Gene Ontology (GO) - Molecular Function for PTPN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001784 phosphotyrosine residue binding IDA 16441242
GO:0004721 phosphoprotein phosphatase activity IEA --
GO:0004725 protein tyrosine phosphatase activity TAS 7490079
GO:0005515 protein binding IPI 21044950
GO:0016787 hydrolase activity IEA --
genes like me logo Genes that share ontologies with PTPN5: view
genes like me logo Genes that share phenotypes with PTPN5: view

Animal Models for PTPN5 Gene

MGI Knock Outs for PTPN5:
  • Ptpn5 Ptpn5<tm1b(KOMP)Wtsi>
  • Ptpn5 Ptpn5<tm1Pjlo>

Animal Model Products

  • Taconic Biosciences Mouse Models for PTPN5

CRISPR Products

miRNA for PTPN5 Gene

miRTarBase miRNAs that target PTPN5

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PTPN5

Clone Products

  • Addgene plasmids for PTPN5

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PTPN5 Gene

Localization for PTPN5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PTPN5 Gene

Endoplasmic reticulum membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PTPN5 gene
Compartment Confidence
nucleus 4
plasma membrane 3
endoplasmic reticulum 3
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Endoplasmic reticulum (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for PTPN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm TAS --
GO:0005783 endoplasmic reticulum IEA --
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane TAS 2263249
genes like me logo Genes that share ontologies with PTPN5: view

Pathways & Interactions for PTPN5 Gene

genes like me logo Genes that share pathways with PTPN5: view

Pathways by source for PTPN5 Gene

2 BioSystems pathways for PTPN5 Gene
1 KEGG pathway for PTPN5 Gene
1 GeneGo (Thomson Reuters) pathway for PTPN5 Gene
1 R&D Systems pathway for PTPN5 Gene
1 Qiagen pathway for PTPN5 Gene
  • Epithelial Adherens Junctions
1 Cell Signaling Technology pathway for PTPN5 Gene

SIGNOR curated interactions for PTPN5 Gene

Activates:
Inactivates:

Gene Ontology (GO) - Biological Process for PTPN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006470 protein dephosphorylation TAS 7490079
GO:0016311 dephosphorylation IEA --
GO:0035335 peptidyl-tyrosine dephosphorylation IEA --
GO:0071345 cellular response to cytokine stimulus TAS --
genes like me logo Genes that share ontologies with PTPN5: view

Drugs & Compounds for PTPN5 Gene

(2) Drugs for PTPN5 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phosphoric acid Approved Pharma 0
Water Approved Pharma 0

(1) Additional Compounds for PTPN5 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Phosphate
  • [po(OH)3]
  • Acide phosphorique
  • Acidum phosphoricum
  • H3PO4
  • Orthophosphoric acid
14066-19-4, 14265-44-2
genes like me logo Genes that share compounds with PTPN5: view

Transcripts for PTPN5 Gene

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PTPN5

Clone Products

  • Addgene plasmids for PTPN5

Alternative Splicing Database (ASD) splice patterns (SP) for PTPN5 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15a · 15b
SP1: - - -
SP2: - -
SP3: - - - -
SP4:
SP5:

Relevant External Links for PTPN5 Gene

GeneLoc Exon Structure for
PTPN5
ECgene alternative splicing isoforms for
PTPN5

Expression for PTPN5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PTPN5 Gene

mRNA differential expression in normal tissues according to GTEx for PTPN5 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x13.2), Brain - Putamen (basal ganglia) (x12.4), and Brain - Caudate (basal ganglia) (x10.2).

Protein differential expression in normal tissues from HIPED for PTPN5 Gene

This gene is overexpressed in Fetal Brain (35.2), Monocytes (16.4), and Frontal cortex (16.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PTPN5 Gene



Protein tissue co-expression partners for PTPN5 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of PTPN5 Gene:

PTPN5

SOURCE GeneReport for Unigene cluster for PTPN5 Gene:

Hs.79092

Evidence on tissue expression from TISSUES for PTPN5 Gene

  • Nervous system(5)
genes like me logo Genes that share expression patterns with PTPN5: view

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTPN5 Gene

Orthologs for PTPN5 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PTPN5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PTPN5 33 32
  • 99.59 (n)
OneToOne
cow
(Bos Taurus)
Mammalia PTPN5 33 32
  • 90.54 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ptpn5 32
  • 90.06 (n)
dog
(Canis familiaris)
Mammalia PTPN5 33 32
  • 89.97 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Ptpn5 17 33 32
  • 88.66 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia PTPN5 33
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PTPN5 33
  • 77 (a)
OneToOne
chicken
(Gallus gallus)
Aves PTPN5 33 32
  • 67.18 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PTPN5 33
  • 69 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii ptpn5 33 32
  • 62.85 (n)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG42327 33
  • 10 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PTP1 33
  • 27 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 33
  • 31 (a)
OneToMany
Cin.2178 32
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2178 32
Species where no ortholog for PTPN5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PTPN5 Gene

ENSEMBL:
Gene Tree for PTPN5 (if available)
TreeFam:
Gene Tree for PTPN5 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for PTPN5: view image

Paralogs for PTPN5 Gene

(41) SIMAP similar genes for PTPN5 Gene using alignment to 7 proteins:

  • PTN5_HUMAN
  • A8MXF1_HUMAN
  • B7ZAF5_HUMAN
  • E9PLZ4_HUMAN
  • L8E916_HUMAN
  • Q86TL3_HUMAN
  • Q86TL6_HUMAN
genes like me logo Genes that share paralogs with PTPN5: view

Variants for PTPN5 Gene

Sequence variations from dbSNP and Humsavar for PTPN5 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs367543221 not-provided, not provided 18,729,473(-) C/T coding_sequence_variant, genic_downstream_transcript_variant, missense_variant, synonymous_variant
rs367543222 not-provided, not provided 18,729,810(-) A/T coding_sequence_variant, genic_downstream_transcript_variant, intron_variant, synonymous_variant
rs367543223 not-provided, not provided 18,729,817(-) C/T coding_sequence_variant, genic_downstream_transcript_variant, intron_variant, missense_variant
rs367543224 not-provided, not provided 18,732,668(-) G/A coding_sequence_variant, missense_variant
rs367543225 not-provided, not provided 18,733,250(-) G/A coding_sequence_variant, synonymous_variant

Structural Variations from Database of Genomic Variants (DGV) for PTPN5 Gene

Variant ID Type Subtype PubMed ID
esv3374278 CNV duplication 20981092
nsv1047371 CNV gain 25217958
nsv476807 CNV novel sequence insertion 20440878
nsv525192 CNV loss 19592680
nsv525452 CNV gain 19592680
nsv553633 CNV gain 21841781
nsv951317 CNV deletion 24416366

Variation tolerance for PTPN5 Gene

Residual Variation Intolerance Score: 53.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.85; 86.98% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PTPN5 Gene

Human Gene Mutation Database (HGMD)
PTPN5
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTPN5

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PTPN5 Gene

Disorders for PTPN5 Gene

MalaCards: The human disease database

(2) MalaCards diseases for PTPN5 Gene - From: HGMD and DISEASES

Disorder Aliases PubMed IDs
reflex epilepsy
  • epilepsy, sensory-induced
acute stress disorder
  • traumatic stress disorder
- elite association - COSMIC cancer census association via MalaCards
Search PTPN5 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for PTPN5

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with PTPN5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PTPN5 Gene

Publications for PTPN5 Gene

  1. Molecular cloning of the human homolog of a striatum-enriched phosphatase (STEP) gene and chromosomal mapping of the human and murine loci. (PMID: 7490079) Li X … Francke U (Genomics 1995) 3 4 23 56
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 43 56
  3. Frameshift mutations in coding repeats of protein tyrosine phosphatase genes in colorectal tumors with microsatellite instability. (PMID: 19000305) Korff S … Gebert J (BMC cancer 2008) 3 43 56
  4. Crystal structures and inhibitor identification for PTPN5, PTPRR and PTPN7: a family of human MAPK-specific protein tyrosine phosphatases. (PMID: 16441242) Eswaran J … Barr AJ (The Biochemical journal 2006) 3 4 56
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 56

Products for PTPN5 Gene

Sources for PTPN5 Gene