PTPN2P1 Gene (Pseudogene)

PTPN2 Pseudogene 1

GC01M178747
GIFtS:
7
See more...

Aliases for PTPN2P1 Gene

Aliases for PTPN2P1 Gene

  • PTPN2 Pseudogene 1 2 3 5
  • Protein Tyrosine Phosphatase, Non-Receptor Type 2 Pseudogene 1 2 3
  • Protein Tyrosine Phosphatase, Non-Receptor Type 2 (Pseudogene 1) 2
  • Protein Tyrosine Phosphatase, Non-Receptor Type-Like Pseudogene 3
  • HCG2025063 3
  • PTPN2P1 5
  • PTPN2P 3
  • PTPTP1 3

External Ids for PTPN2P1 Gene

Previous HGNC Symbols for PTPN2P1 Gene

  • PTPN2P
  • PTPTP1

Previous GeneCards Identifiers for PTPN2P1 Gene

  • GC01U990128
  • GC01M178717

Summaries for PTPN2P1 Gene

GeneCards Summary for PTPN2P1 Gene

PTPN2P1 (PTPN2 Pseudogene 1) is a Pseudogene.

Additional gene information for PTPN2P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTPN2P1 Gene

Genomics for PTPN2P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for PTPN2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J178753 Enhancer 0.7 Ensembl dbSUPER 0.4 -5.2 -5171 0.4 FOXA2 USF1 SMAD4 HNF4A RARA TOE1 FOXA3 NR3C1 CTCF ENSG00000201791 PTPN2P1 RALGPS2 ANGPTL1
GH01J178754 Enhancer 0.6 Ensembl dbSUPER 0.4 -5.7 -5738 0.5 CTCF REST RAD21 SMC3 ENSG00000201791 PTPN2P1 RALGPS2 ANGPTL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTPN2P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PTPN2P1 Gene

Genomic Locations for PTPN2P1 Gene
chr1:178,746,344-178,747,830
(GRCh38/hg38)
Size:
1,487 bases
Orientation:
Minus strand
chr1:178,715,479-178,716,965
(GRCh37/hg19)
Size:
1,487 bases
Orientation:
Minus strand

Genomic View for PTPN2P1 Gene

Genes around PTPN2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTPN2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTPN2P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PTPN2P1 Gene

Proteins for PTPN2P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for PTPN2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTPN2P1 Gene

Domains & Families for PTPN2P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTPN2P1 Gene

Function for PTPN2P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for PTPN2P1 Gene

GENATLAS Biochemistry:
protein tyrosine phosphatase,non receptor type 2,pseudogene 1

Phenotypes for PTPN2P1 Gene

GenomeRNAi human phenotypes for PTPN2P1:
genes like me logo Genes that share phenotypes with PTPN2P1: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTPN2P1 Gene

Localization for PTPN2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTPN2P1 Gene

Pathways & Interactions for PTPN2P1 Gene

PathCards logo

SuperPathways for PTPN2P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PTPN2P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PTPN2P1 Gene

Drugs & Compounds for PTPN2P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for PTPN2P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for PTPN2P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PTPN2P1 Gene

No ASD Table

Relevant External Links for PTPN2P1 Gene

GeneLoc Exon Structure for
PTPN2P1

Expression for PTPN2P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PTPN2P1 Gene

mRNA expression in normal human tissues for PTPN2P1 Gene
mRNA expression by GTEx for PTPN2P1 Gene
genes like me logo Genes that share expression patterns with PTPN2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTPN2P1 Gene

Orthologs for PTPN2P1 Gene

Evolution for PTPN2P1 Gene

ENSEMBL:
Gene Tree for PTPN2P1 (if available)
TreeFam:
Gene Tree for PTPN2P1 (if available)

No data available for Orthologs for PTPN2P1 Gene

Paralogs for PTPN2P1 Gene

No data available for Paralogs for PTPN2P1 Gene

Variants for PTPN2P1 Gene

Additional Variant Information for PTPN2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTPN2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PTPN2P1 Gene

Disorders for PTPN2P1 Gene

No disorders were found for PTPN2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PTPN2P1 Gene

Publications for PTPN2P1 Gene

  1. Isolation and mapping of human T-cell protein tyrosine phosphatase sequences: localization of genes and pseudogenes discriminated using fluorescence hybridization with genomic versus cDNA probes. (PMID: 8325634) Johnson CV … Lawrence JB (Genomics 1993) 2 3
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

ExternalLinks

View latest publications for PTPN2P1 gene in Mastermind

Products for PTPN2P1 Gene

Sources for PTPN2P1 Gene