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Aliases for PTPN22 Gene

Aliases for PTPN22 Gene

  • Protein Tyrosine Phosphatase, Non-Receptor Type 22 2 3 5
  • Protein Tyrosine Phosphatase, Non-Receptor Type 22 (Lymphoid) 2 3
  • Hematopoietic Cell Protein-Tyrosine Phosphatase 70Z-PEP 3 4
  • Protein Tyrosine Phosphatase, Non-Receptor Type 8 2 3
  • PEST-Domain Phosphatase 3 4
  • PTPN8 3 4
  • PEP 3 4
  • LYP 3 4
  • Tyrosine-Protein Phosphatase Non-Receptor Type 22 3
  • Lymphoid-Specific Protein Tyrosine Phosphatase 3
  • Lymphoid Phosphatase 4
  • EC 3.1.3.48 4
  • PTPN22.5 3
  • PTPN22.6 3
  • LYP1 3
  • LYP2 3

External Ids for PTPN22 Gene

Previous HGNC Symbols for PTPN22 Gene

  • PTPN8

Previous GeneCards Identifiers for PTPN22 Gene

  • GC01M114770
  • GC01M113238
  • GC01M113456
  • GC01M113655
  • GC01M114003
  • GC01M114157
  • GC01M114356
  • GC01M112214

Summaries for PTPN22 Gene

Entrez Gene Summary for PTPN22 Gene

  • This gene encodes of member of the non-receptor class 4 subfamily of the protein-tyrosine phosphatase family. The encoded protein is a lymphoid-specific intracellular phosphatase that associates with the molecular adapter protein CBL and may be involved in regulating CBL function in the T-cell receptor signaling pathway. Mutations in this gene may be associated with a range of autoimmune disorders including Type 1 Diabetes, rheumatoid arthritis, systemic lupus erythematosus and Graves' disease. Alternatively spliced transcript variants encoding distinct isoforms have been described. [provided by RefSeq, Mar 2009]

GeneCards Summary for PTPN22 Gene

PTPN22 (Protein Tyrosine Phosphatase, Non-Receptor Type 22) is a Protein Coding gene. Diseases associated with PTPN22 include Systemic Lupus Erythematosus and Rheumatoid Arthritis. Among its related pathways are PAK Pathway and Innate Immune System. Gene Ontology (GO) annotations related to this gene include phosphatase activity and protein tyrosine phosphatase activity. An important paralog of this gene is PTPN12.

UniProtKB/Swiss-Prot for PTPN22 Gene

  • Acts as negative regulator of T-cell receptor (TCR) signaling by direct dephosphorylation of the Src family kinases LCK and FYN, ITAMs of the TCRz/CD3 complex, as well as ZAP70, VAV, VCP and other key signaling molecules (PubMed:16461343, PubMed:18056643). Associates with and probably dephosphorylates CBL. Dephosphorylates LCK at its activating Tyr-394 residue (PubMed:21719704). Dephosphorylates ZAP70 at its activating Tyr-493 residue (PubMed:16461343). Dephosphorylates the immune system activator SKAP2 (PubMed:21719704). Positively regulates toll-like receptor (TLR)-induced type 1 interferon production (PubMed:23871208). Promotes host antiviral responses mediated by type 1 interferon (By similarity). Regulates NOD2-induced pro-inflammatory cytokine secretion and autophagy (PubMed:23991106).

Gene Wiki entry for PTPN22 Gene

Additional gene information for PTPN22 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PTPN22 Gene

Genomics for PTPN22 Gene

GeneHancer (GH) Regulatory Elements for PTPN22 Gene

Promoters and enhancers for PTPN22 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I113869 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 560.6 -1.4 -1420 7.6 HDGF PKNOX1 ATF1 SMAD1 YBX1 IRF4 ZNF766 ZNF207 ZNF143 ATF7 PTPN22 AP4B1 PHTF1 RSBN1 DCLRE1B ENSG00000231128 HIPK1 HIPK1-AS1 OLFML3 AP4B1-AS1
GH01I113809 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 9.3 +60.2 60207 4.7 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC ZNF610 NBN NR2C1 RSBN1 AP4B1-AS1 ENSG00000231128 LOC100421402 TRIM33 LRIG2 SIKE1 PHTF1 OLFML3 AP4B1
GH01I113903 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.7 -33.2 -33155 3.1 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC AP4B1 DCLRE1B LOC100421402 RSBN1 LRIG2 SIKE1 TRIM33 PTPN22 AP4B1-AS1 BCL2L15
GH01I113857 Enhancer 1 Ensembl ENCODE 9.7 +11.9 11905 4.7 HDAC1 NFRKB BATF IRF4 ZNF207 ATF7 RCOR1 BCLAF1 IKZF2 RUNX3 HIPK1 AP4B1 DCLRE1B BCL2L15 HIPK1-AS1 PTPN22 OLFML3 PHTF1 GC01M113841 AP4B1-AS1
GH01I113779 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5.5 +88.6 88571 6.4 HDGF ATF1 PKNOX1 CLOCK SMAD1 FEZF1 TCF12 ATF7 RUNX3 JUNB RSBN1 PHTF1 ENSG00000231128 AP4B1 MAGI3 PTPN22 HIPK1 PIR59903
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PTPN22 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the PTPN22 gene promoter:

Genomic Locations for PTPN22 Gene

Genomic Locations for PTPN22 Gene
chr1:113,813,811-113,871,759
(GRCh38/hg38)
Size:
57,949 bases
Orientation:
Minus strand
chr1:114,356,433-114,414,381
(GRCh37/hg19)

Genomic View for PTPN22 Gene

Genes around PTPN22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTPN22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTPN22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTPN22 Gene

Proteins for PTPN22 Gene

  • Protein details for PTPN22 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2R2-PTN22_HUMAN
    Recommended name:
    Tyrosine-protein phosphatase non-receptor type 22
    Protein Accession:
    Q9Y2R2
    Secondary Accessions:
    • A0N0K6
    • B1ALC8
    • D4NZ71
    • E9PLD8
    • E9PPI1
    • O95063
    • O95064
    • Q6IPX8
    • Q8WVM1

    Protein attributes for PTPN22 Gene

    Size:
    807 amino acids
    Molecular mass:
    91705 Da
    Quaternary structure:
    • Interacts with CSK (PubMed:15208781). Interacts with LPXN (By similarity). Interacts with CBL (PubMed:10068674). Interacts with TRAF3 (via MATH domain); the interaction promotes TRAF3 polyubiquitination (PubMed:23871208).

    Three dimensional structures from OCA and Proteopedia for PTPN22 Gene

    Alternative splice isoforms for PTPN22 Gene

neXtProt entry for PTPN22 Gene

Post-translational modifications for PTPN22 Gene

  • Phosphorylation on Ser-35 by PKC/PRKCD abrogates its ability to dephosphorylate and inactivate the SRC family kinases.
  • Ubiquitination at isoforms=2, 3, 4, 6315, Lys411, isoforms=2, 3, 4, 6448, and Lys506

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for PTPN22 (PTPN22)
  • Abcam antibodies for PTPN22
  • Cloud-Clone Corp. Antibodies for PTPN22
  • Santa Cruz Biotechnology (SCBT) Antibodies for PTPN22

No data available for DME Specific Peptides for PTPN22 Gene

Domains & Families for PTPN22 Gene

Gene Families for PTPN22 Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • Enzymes
  • Plasma proteins
  • Potential drug targets
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for PTPN22 Gene

Graphical View of Domain Structure for InterPro Entry

Q9Y2R2

UniProtKB/Swiss-Prot:

PTN22_HUMAN :
  • Belongs to the protein-tyrosine phosphatase family. Non-receptor class 4 subfamily.
Family:
  • Belongs to the protein-tyrosine phosphatase family. Non-receptor class 4 subfamily.
genes like me logo Genes that share domains with PTPN22: view

Function for PTPN22 Gene

Molecular function for PTPN22 Gene

GENATLAS Biochemistry:
Protein tyrosine-phosphatase non receptor type 22,lymphoid-specific,involved in regulation of the function of protooncogene CBL
UniProtKB/Swiss-Prot CatalyticActivity:
Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate.
UniProtKB/Swiss-Prot EnzymeRegulation:
Down-regulated by phosphorylation.
UniProtKB/Swiss-Prot Function:
Acts as negative regulator of T-cell receptor (TCR) signaling by direct dephosphorylation of the Src family kinases LCK and FYN, ITAMs of the TCRz/CD3 complex, as well as ZAP70, VAV, VCP and other key signaling molecules (PubMed:16461343, PubMed:18056643). Associates with and probably dephosphorylates CBL. Dephosphorylates LCK at its activating Tyr-394 residue (PubMed:21719704). Dephosphorylates ZAP70 at its activating Tyr-493 residue (PubMed:16461343). Dephosphorylates the immune system activator SKAP2 (PubMed:21719704). Positively regulates toll-like receptor (TLR)-induced type 1 interferon production (PubMed:23871208). Promotes host antiviral responses mediated by type 1 interferon (By similarity). Regulates NOD2-induced pro-inflammatory cytokine secretion and autophagy (PubMed:23991106).
UniProtKB/Swiss-Prot Induction:
By muramyl-dipeptide and lipopolysaccharide.

Enzyme Numbers (IUBMB) for PTPN22 Gene

Phenotypes From GWAS Catalog for PTPN22 Gene

Gene Ontology (GO) - Molecular Function for PTPN22 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004721 phosphoprotein phosphatase activity IEA --
GO:0004725 protein tyrosine phosphatase activity TAS,IEA --
GO:0005515 protein binding IPI 10068674
GO:0016787 hydrolase activity IEA --
GO:0016791 phosphatase activity IEA,IDA 23991106
genes like me logo Genes that share ontologies with PTPN22: view
genes like me logo Genes that share phenotypes with PTPN22: view

Human Phenotype Ontology for PTPN22 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for PTPN22 Gene

MGI Knock Outs for PTPN22:

miRNA for PTPN22 Gene

miRTarBase miRNAs that target PTPN22

Clone Products

No data available for Transcription Factor Targets and HOMER Transcription for PTPN22 Gene

Localization for PTPN22 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PTPN22 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PTPN22 gene
Compartment Confidence
plasma membrane 5
nucleus 5
cytosol 5
extracellular 2
cytoskeleton 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Plasma membrane (2)
  • Nucleoplasm (1)
  • Vesicles (1)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for PTPN22 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA,IDA 10940933
GO:0005737 cytoplasm TAS,IEA 20401454
GO:0005829 cytosol TAS --
GO:0009898 cytoplasmic side of plasma membrane IDA,IEA 10940933
GO:0048471 perinuclear region of cytoplasm IDA 10068674
genes like me logo Genes that share ontologies with PTPN22: view

Pathways & Interactions for PTPN22 Gene

genes like me logo Genes that share pathways with PTPN22: view

Pathways by source for PTPN22 Gene

1 GeneGo (Thomson Reuters) pathway for PTPN22 Gene
2 Qiagen pathways for PTPN22 Gene

SIGNOR curated interactions for PTPN22 Gene

Inactivates:
Is inactivated by:

Gene Ontology (GO) - Biological Process for PTPN22 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002376 immune system process IEA --
GO:0002685 regulation of leukocyte migration IEA --
GO:0006470 protein dephosphorylation IEA,TAS 21044313
GO:0006914 autophagy IEA --
GO:0010507 negative regulation of autophagy IMP 23991106
genes like me logo Genes that share ontologies with PTPN22: view

Drugs & Compounds for PTPN22 Gene

(4) Drugs for PTPN22 Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phosphoric acid Approved Pharma 0
Water Approved Pharma 0

(2) Additional Compounds for PTPN22 Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Phosphate
  • NFB Orthophosphate
  • O-Phosphoric acid
  • Ortho-phosphate
  • Orthophosphate (PO43-)
  • Orthophosphate(3-)
14265-44-2
genes like me logo Genes that share compounds with PTPN22: view

Transcripts for PTPN22 Gene

Unigene Clusters for PTPN22 Gene

Protein tyrosine phosphatase, non-receptor type 22 (lymphoid):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PTPN22 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^ 21 ^ 22
SP1: - - - -
SP2: - -
SP3: -
SP4: - - - - - - - - - - - - - - -
SP5:

Relevant External Links for PTPN22 Gene

GeneLoc Exon Structure for
PTPN22
ECgene alternative splicing isoforms for
PTPN22

Expression for PTPN22 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PTPN22 Gene

mRNA differential expression in normal tissues according to GTEx for PTPN22 Gene

This gene is overexpressed in Whole Blood (x13.5).

Protein differential expression in normal tissues from HIPED for PTPN22 Gene

This gene is overexpressed in CD8 Tcells (48.3) and Spleen (14.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for PTPN22 Gene



Protein tissue co-expression partners for PTPN22 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of PTPN22 Gene:

PTPN22

SOURCE GeneReport for Unigene cluster for PTPN22 Gene:

Hs.535276

mRNA Expression by UniProt/SwissProt for PTPN22 Gene:

Q9Y2R2-PTN22_HUMAN
Tissue specificity: Expressed in bone marrow, B and T-cells, PBMCs, natural killer cells, monocytes, dendritic cells and neutrophils (PubMed:15208781). Both isoform 1 and 4 are predominantly expressed in lymphoid tissues and cells. Isoform 1 is expressed in thymocytes and both mature B and T-cells.

Evidence on tissue expression from TISSUES for PTPN22 Gene

  • Thyroid gland(2.8)
  • Blood(2.5)
  • Pancreas(2.1)

Phenotype-based relationships between genes and organs from Gene ORGANizer for PTPN22 Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • digestive
  • endocrine
  • immune
  • integumentary
  • nervous
  • respiratory
  • skeletal muscle
  • skeleton
  • urinary
Regions:
Head and neck:
  • brain
  • cranial nerve
  • ear
  • eye
  • eyelid
  • face
  • forehead
  • head
  • jaw
  • larynx
  • mandible
  • maxilla
  • mouth
  • neck
  • nose
  • pituitary gland
  • sinus
  • skull
  • tooth
Thorax:
  • bronchus
  • esophagus
  • heart
  • lung
  • trachea
Abdomen:
  • kidney
  • stomach
Limb:
  • ankle
  • digit
  • elbow
  • finger
  • foot
  • hand
  • hip
  • knee
  • lower limb
  • shoulder
  • toe
  • upper limb
  • wrist
General:
  • blood
  • blood vessel
  • coagulation system
  • hair
  • peripheral nerve
  • peripheral nervous system
  • red blood cell
  • skin
  • white blood cell
genes like me logo Genes that share expression patterns with PTPN22: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for PTPN22 Gene

Orthologs for PTPN22 Gene

This gene was present in the common ancestor of animals.

Orthologs for PTPN22 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PTPN22 33 34
  • 99.79 (n)
dog
(Canis familiaris)
Mammalia PTPN22 33 34
  • 86.8 (n)
cow
(Bos Taurus)
Mammalia PTPN22 33 34
  • 86.65 (n)
mouse
(Mus musculus)
Mammalia Ptpn22 33 16 34
  • 79.95 (n)
rat
(Rattus norvegicus)
Mammalia Ptpn22 33
  • 78.65 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia PTPN22 34
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PTPN22 34
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves PTPN22 33 34
  • 59.5 (n)
lizard
(Anolis carolinensis)
Reptilia PTPN22 34
  • 42 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ptpn22 33
  • 54.03 (n)
zebrafish
(Danio rerio)
Actinopterygii ptpn22 34
  • 30 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea T22C1.8 35
  • 34 (a)
ZK616.7 35
  • 33 (a)
M04G7.2 35
  • 31 (a)
Y41D4A.5 35 34
  • 31 (a)
Species where no ortholog for PTPN22 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PTPN22 Gene

ENSEMBL:
Gene Tree for PTPN22 (if available)
TreeFam:
Gene Tree for PTPN22 (if available)

Paralogs for PTPN22 Gene

Variants for PTPN22 Gene

Sequence variations from dbSNP and Humsavar for PTPN22 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs2476601 risk-factor, Diabetes mellitus, insulin-dependent, susceptibility to, Rheumatoid arthritis, Systemic lupus erythematosus, susceptibility to, Hashimoto thyroiditis, susceptibility to, Addison disease, susceptibility to, Diabetes mellitus, insulin-dependent (IDDM) [MIM:222100], Rheumatoid arthritis (RA) [MIM:180300], Systemic lupus erythematosus (SLE) [MIM:152700], Vitiligo (VTLG) [MIM:193200] 113,834,946(-) A/G coding_sequence_variant, genic_downstream_transcript_variant, missense_variant
rs2488457 risk-factor, Diabetes mellitus, insulin-dependent, susceptibility to 113,872,746(-) G/A/C upstream_transcript_variant
rs56048322 uncertain-significance, not specified 113,829,592(-) C/G coding_sequence_variant, downstream_transcript_variant, genic_downstream_transcript_variant, missense_variant
rs1000012779 -- 113,861,150(-) T/C intron_variant
rs1000069243 -- 113,865,159(-) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PTPN22 Gene

Variant ID Type Subtype PubMed ID
nsv951398 CNV duplication 24416366
nsv831093 CNV loss 17160897
nsv473902 CNV novel sequence insertion 20440878
esv3587251 CNV loss 21293372
esv3587250 CNV loss 21293372
esv3587240 CNV loss 21293372
esv3587239 CNV loss 21293372
esv23869 CNV loss 19812545

Variation tolerance for PTPN22 Gene

Residual Variation Intolerance Score: 86.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.56; 55.89% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PTPN22 Gene

Human Gene Mutation Database (HGMD)
PTPN22
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTPN22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PTPN22 Gene

Disorders for PTPN22 Gene

MalaCards: The human disease database

(32) MalaCards diseases for PTPN22 Gene - From: HGMD, OMIM, ClinVar, GTR, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards

- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

PTN22_HUMAN
  • Diabetes mellitus, insulin-dependent (IDDM) [MIM:222100]: A multifactorial disorder of glucose homeostasis that is characterized by susceptibility to ketoacidosis in the absence of insulin therapy. Clinical features are polydipsia, polyphagia and polyuria which result from hyperglycemia-induced osmotic diuresis and secondary thirst. These derangements result in long-term complications that affect the eyes, kidneys, nerves, and blood vessels. {ECO:0000269 PubMed:15004560}. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry.
  • Rheumatoid arthritis (RA) [MIM:180300]: An inflammatory disease with autoimmune features and a complex genetic component. It primarily affects the joints and is characterized by inflammatory changes in the synovial membranes and articular structures, widespread fibrinoid degeneration of the collagen fibers in mesenchymal tissues, and by atrophy and rarefaction of bony structures. {ECO:0000269 PubMed:15208781}. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry.
  • Systemic lupus erythematosus (SLE) [MIM:152700]: A chronic, relapsing, inflammatory, and often febrile multisystemic disorder of connective tissue, characterized principally by involvement of the skin, joints, kidneys and serosal membranes. It is of unknown etiology, but is thought to represent a failure of the regulatory mechanisms of the autoimmune system. The disease is marked by a wide range of system dysfunctions, an elevated erythrocyte sedimentation rate, and the formation of LE cells in the blood or bone marrow. {ECO:0000269 PubMed:15273934}. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry.
  • Vitiligo (VTLG) [MIM:193200]: A pigmentary disorder of the skin and mucous membranes. It is characterized by circumscribed depigmented macules and patches, commonly on extensor aspects of extremities, on the face or neck and in skin folds. Vitiligo is a progressive disorder in which some or all of the melanocytes in the affected skin are selectively destroyed. It is a multifactorial disorder with a complex etiology probably including autoimmune mechanisms, and is associated with an elevated risk of other autoimmune diseases. {ECO:0000269 PubMed:16015369}. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry.

Additional Disease Information for PTPN22

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with PTPN22: view

No data available for Genatlas for PTPN22 Gene

Publications for PTPN22 Gene

  1. A single-nucleotide polymorphism in the gene encoding lymphoid protein tyrosine phosphatase (PTPN22) confers susceptibility to generalised vitiligo. (PMID: 16015369) Cantón I … Kemp EH (Genes and immunity 2005) 3 4 22 44 58
  2. The codon 620 tryptophan allele of the lymphoid tyrosine phosphatase (LYP) gene is a major determinant of Graves' disease. (PMID: 15531553) Velaga MR … Pearce SH (The Journal of clinical endocrinology and metabolism 2004) 3 4 22 44 58
  3. A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis. (PMID: 15208781) Begovich AB … Gregersen PK (American journal of human genetics 2004) 3 4 22 44 58
  4. Cloning and characterization of a lymphoid-specific, inducible human protein tyrosine phosphatase, Lyp. (PMID: 10068674) Cohen S … Roifman CM (Blood 1999) 2 3 4 22 58
  5. Supervised machine learning and logistic regression identifies novel epistatic risk factors with PTPN22 for rheumatoid arthritis. (PMID: 20090771) Briggs FB … Barcellos LF (Genes and immunity 2010) 3 22 44 58

Products for PTPN22 Gene

Sources for PTPN22 Gene

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