Aliases for PTPN20CP Gene

Aliases for PTPN20CP Gene

  • Protein Tyrosine Phosphatase Non-Receptor Type 20C, Pseudogene 2 3 5
  • Protein Tyrosine Phosphatase, Non-Receptor Type 20C 2
  • BA164N7.3 3
  • PTPN20C 3

External Ids for PTPN20CP Gene

Previous HGNC Symbols for PTPN20CP Gene

  • PTPN20C

Previous GeneCards Identifiers for PTPN20CP Gene

  • GC10M049275

Summaries for PTPN20CP Gene

GeneCards Summary for PTPN20CP Gene

PTPN20CP (Protein Tyrosine Phosphatase Non-Receptor Type 20C, Pseudogene) is a Pseudogene.

Additional gene information for PTPN20CP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTPN20CP Gene

Genomics for PTPN20CP Gene

GeneHancer (GH) Regulatory Elements for PTPN20CP Gene

Promoters and enhancers for PTPN20CP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J048603 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.2 -465.0 -464960 6.8 CTCF USF2 MYC MAX RAD21 ZNF687 ZIC2 POLR2A REST TRIM22 ARHGAP22 lnc-FRMPD2-5 PTPN20CP lnc-WDFY4-8
GH10J048476 Enhancer 1.2 Ensembl ENCODE dbSUPER 4.4 -337.4 -337374 8 SMARCE1 L3MBTL2 ZNF121 TEAD4 GTF2F1 CBFA2T2 MLLT1 SP7 SMARCA4 ZNF639 MAPK8 PTPN20CP ENSG00000279822 ARHGAP22-IT1 lnc-FRMPD2-5 ARHGAP22
GH10J048253 Enhancer 0.5 Ensembl ENCODE 8.1 -114.1 -114075 2.2 JUN JUND PTPN20CP AGAP12P lnc-ARHGAP22-7 FRMPD2
GH10J048623 Enhancer 0.8 Ensembl ENCODE dbSUPER 4.9 -484.5 -484475 4.2 ZNF687 IKZF1 NBN JUN EBF1 ATF7 TARDBP ENSG00000251413 ARHGAP22 PTPN20CP lnc-WDFY4-8
GH10J048720 Enhancer 0.7 Ensembl dbSUPER 4.4 -580.7 -580675 1.8 LCORL IKZF1 FOXK2 FOXA1 GATAD2B PLRG1 FOXP1 NBN PTPN20CP RPL13AP19 WDFY4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTPN20CP on UCSC Golden Path with GeneCards custom track

Genomic Locations for PTPN20CP Gene

Genomic Locations for PTPN20CP Gene
chr10:48,064,308-48,140,426
(GRCh38/hg38)
Size:
76,119 bases
Orientation:
Minus strand
chr10:49,272,334-49,348,465
(GRCh37/hg19)
Size:
76,132 bases
Orientation:
Minus strand

Genomic View for PTPN20CP Gene

Genes around PTPN20CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTPN20CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTPN20CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTPN20CP Gene

Proteins for PTPN20CP Gene

Post-translational modifications for PTPN20CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTPN20CP Gene

Domains & Families for PTPN20CP Gene

Gene Families for PTPN20CP Gene

genes like me logo Genes that share domains with PTPN20CP: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTPN20CP Gene

Function for PTPN20CP Gene

Phenotypes From GWAS Catalog for PTPN20CP Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTPN20CP Gene

Localization for PTPN20CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTPN20CP Gene

Pathways & Interactions for PTPN20CP Gene

PathCards logo

SuperPathways for PTPN20CP Gene

No Data Available

Gene Ontology (GO) - Biological Process for PTPN20CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PTPN20CP Gene

Drugs & Compounds for PTPN20CP Gene

No Compound Related Data Available

Transcripts for PTPN20CP Gene

mRNA/cDNA for PTPN20CP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PTPN20CP Gene

No ASD Table

Relevant External Links for PTPN20CP Gene

GeneLoc Exon Structure for
PTPN20CP
ECgene alternative splicing isoforms for
PTPN20CP

Expression for PTPN20CP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PTPN20CP Gene

mRNA differential expression in normal tissues according to GTEx for PTPN20CP Gene

This gene is overexpressed in Testis (x7.3).

NURSA nuclear receptor signaling pathways regulating expression of PTPN20CP Gene:

PTPN20CP
genes like me logo Genes that share expression patterns with PTPN20CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTPN20CP Gene

Orthologs for PTPN20CP Gene

Evolution for PTPN20CP Gene

ENSEMBL:
Gene Tree for PTPN20CP (if available)
TreeFam:
Gene Tree for PTPN20CP (if available)

No data available for Orthologs for PTPN20CP Gene

Paralogs for PTPN20CP Gene

No data available for Paralogs for PTPN20CP Gene

Variants for PTPN20CP Gene

Additional Variant Information for PTPN20CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTPN20CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PTPN20CP Gene

Disorders for PTPN20CP Gene

No disorders were found for PTPN20CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PTPN20CP Gene

Publications for PTPN20CP Gene

No publications were found for PTPN20CP Gene.

Products for PTPN20CP Gene

Sources for PTPN20CP Gene