Aliases for PTP4A2P2 Gene

Aliases for PTP4A2P2 Gene

  • PTP4A2 Pseudogene 2 2 3 5
  • Protein Tyrosine Phosphatase Type IVA, Member 2 Pseudogene 2 2 3
  • Protein Tyrosine Phosphatase Type IVA Pseudogene 2 2 3
  • Protein Tyrosine Phosphatase IVA Pseudogene 2 3
  • PTP4A2P2 5
  • PTP4AP2 3

External Ids for PTP4A2P2 Gene

Previous HGNC Symbols for PTP4A2P2 Gene

  • PTP4AP2

Previous GeneCards Identifiers for PTP4A2P2 Gene

  • GC11M133500
  • GC11M133993

Summaries for PTP4A2P2 Gene

GeneCards Summary for PTP4A2P2 Gene

PTP4A2P2 (PTP4A2 Pseudogene 2) is a Pseudogene.

Additional gene information for PTP4A2P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTP4A2P2 Gene

Genomics for PTP4A2P2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PTP4A2P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J134124 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -0.7 -716 2.7 ZSCAN16 SIN3A MAFK JUND CTCF RFX5 BHLHE40 EZH2 MNT NFE2L2 PTP4A2P2 lnc-NCAPD3-2 JAM3 ACAD8 ENSG00000254616 ENSG00000255348 NCAPD3 piR-31252 VPS26B
GH11J134125 Enhancer 0.3 dbSUPER 250.7 +0.9 946 0.5 RNF2 CBX8 HSALNG0088359 PTP4A2P2 lnc-NCAPD3-2 GLB1L3 ENSG00000254616 ENSG00000255348 NCAPD3 IGSF9B JAM3 VPS26B
GH11J134559 Enhancer 0.4 Ensembl 5.7 -435.4 -435398 2 ZIC2 GLIS1 GATA2 PTP4A2P2 NCAPD3 GLB1L2 HSALNG0088397 ENSG00000254573 HSALNG0088398 B3GAT1
GH11J134127 Enhancer 0.3 dbSUPER 0.7 -3.0 -3005 0.5 ZNF701 JAM3 ENSG00000254616 ENSG00000255348 NCAPD3 PTP4A2P2 piR-31252 VPS26B
GH11J134133 Enhancer 0.3 Ensembl 0.4 -7.3 -7299 0.6 NFE2 ZNF558 JAM3 ENSG00000254616 ENSG00000255348 NCAPD3 piR-31252 PTP4A2P2 VPS26B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTP4A2P2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PTP4A2P2 Gene

Latest Assembly
chr11:134,123,130-134,125,202
(GRCh38/hg38)
Size:
2,073 bases
Orientation:
Minus strand

Previous Assembly
chr11:133,993,025-133,995,097
(GRCh37/hg19 by Entrez Gene)
Size:
2,073 bases
Orientation:
Minus strand

chr11:133,993,723-133,994,224
(GRCh37/hg19 by Ensembl)
Size:
502 bases
Orientation:
Minus strand

Genomic View for PTP4A2P2 Gene

Genes around PTP4A2P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTP4A2P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTP4A2P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTP4A2P2 Gene

Proteins for PTP4A2P2 Gene

Post-translational modifications for PTP4A2P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTP4A2P2 Gene

Domains & Families for PTP4A2P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTP4A2P2 Gene

Function for PTP4A2P2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTP4A2P2 Gene

Localization for PTP4A2P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTP4A2P2 Gene

Pathways & Interactions for PTP4A2P2 Gene

PathCards logo

SuperPathways for PTP4A2P2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PTP4A2P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PTP4A2P2 Gene

Drugs & Compounds for PTP4A2P2 Gene

No Compound Related Data Available

Transcripts for PTP4A2P2 Gene

mRNA/cDNA for PTP4A2P2 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PTP4A2P2 Gene

No ASD Table

Relevant External Links for PTP4A2P2 Gene

GeneLoc Exon Structure for
PTP4A2P2

Expression for PTP4A2P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PTP4A2P2 Gene

genes like me logo Genes that share expression patterns with PTP4A2P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTP4A2P2 Gene

Orthologs for PTP4A2P2 Gene

Evolution for PTP4A2P2 Gene

ENSEMBL:
Gene Tree for PTP4A2P2 (if available)
TreeFam:
Gene Tree for PTP4A2P2 (if available)

No data available for Orthologs for PTP4A2P2 Gene

Paralogs for PTP4A2P2 Gene

No data available for Paralogs for PTP4A2P2 Gene

Variants for PTP4A2P2 Gene

Additional Variant Information for PTP4A2P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTP4A2P2

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PTP4A2P2 Gene

Disorders for PTP4A2P2 Gene

Additional Disease Information for PTP4A2P2

No disorders were found for PTP4A2P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PTP4A2P2 Gene

Publications for PTP4A2P2 Gene

  1. Characterization and genomic mapping of genes and pseudogenes of a new human protein tyrosine phosphatase. (PMID: 8661118) Zhao Z … Caskey CT (Genomics 1996) 2 3
  2. Localization of the human phosphotyrosine phosphatase-related genes (h-PRL-1) to chromosome bands 1p35-p34, 17q12-q21, 11q24-q25 and 12q24. (PMID: 8931711) Montagna M … Lenoir GM (Human genetics 1996) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for PTP4A2P2 Gene

Sources for PTP4A2P2 Gene