Aliases for PTP4A2P1 Gene

Aliases for PTP4A2P1 Gene

  • PTP4A2 Pseudogene 1 2 3 5
  • Protein Tyrosine Phosphatase Type IVA, Member 2 Pseudogene 1 2 3
  • Protein Tyrosine Phosphatase Type IVA Pseudogene 1 2 3
  • H-PRL-1 2 3
  • Protein Tyrosine Phosphatase IVA Pseudogene 1 3
  • PTP4A2P1 5
  • PTP4AP1 3

External Ids for PTP4A2P1 Gene

Previous HGNC Symbols for PTP4A2P1 Gene

  • PTP4AP1

Previous GeneCards Identifiers for PTP4A2P1 Gene

  • GC17P037940
  • GC17P040685

Summaries for PTP4A2P1 Gene

GeneCards Summary for PTP4A2P1 Gene

PTP4A2P1 (PTP4A2 Pseudogene 1) is a Pseudogene.

Additional gene information for PTP4A2P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTP4A2P1 Gene

Genomics for PTP4A2P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PTP4A2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J042528 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.1 -2051 4.3 GATAD2A CTCF PRDM10 TFE3 ZNF512 LEF1 IKZF1 NFKBIZ RCOR2 BACH1 lnc-NAGLU-2 TUBG2 NAGLU HSD17B1 MLX BECN1 COASY LINC00671 PTP4A2P1 lnc-NAGLU-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTP4A2P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PTP4A2P1 Gene

Genomic Locations for PTP4A2P1 Gene
chr17:42,533,120-42,534,226
(GRCh38/hg38)
Size:
1,107 bases
Orientation:
Plus strand
chr17:40,685,151-40,686,232
(GRCh37/hg19)
Size:
1,082 bases
Orientation:
Plus strand

Genomic View for PTP4A2P1 Gene

Genes around PTP4A2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTP4A2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTP4A2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTP4A2P1 Gene

Proteins for PTP4A2P1 Gene

Post-translational modifications for PTP4A2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTP4A2P1 Gene

Domains & Families for PTP4A2P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTP4A2P1 Gene

Function for PTP4A2P1 Gene

Phenotypes From GWAS Catalog for PTP4A2P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTP4A2P1 Gene

Localization for PTP4A2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTP4A2P1 Gene

Pathways & Interactions for PTP4A2P1 Gene

PathCards logo

SuperPathways for PTP4A2P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PTP4A2P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PTP4A2P1 Gene

Drugs & Compounds for PTP4A2P1 Gene

No Compound Related Data Available

Transcripts for PTP4A2P1 Gene

mRNA/cDNA for PTP4A2P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PTP4A2P1 Gene

No ASD Table

Relevant External Links for PTP4A2P1 Gene

GeneLoc Exon Structure for
PTP4A2P1

Expression for PTP4A2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PTP4A2P1 Gene

mRNA differential expression in normal tissues according to GTEx for PTP4A2P1 Gene

This gene is overexpressed in Liver (x4.7).
genes like me logo Genes that share expression patterns with PTP4A2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTP4A2P1 Gene

Orthologs for PTP4A2P1 Gene

Evolution for PTP4A2P1 Gene

ENSEMBL:
Gene Tree for PTP4A2P1 (if available)
TreeFam:
Gene Tree for PTP4A2P1 (if available)

No data available for Orthologs for PTP4A2P1 Gene

Paralogs for PTP4A2P1 Gene

No data available for Paralogs for PTP4A2P1 Gene

Variants for PTP4A2P1 Gene

Additional Variant Information for PTP4A2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTP4A2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PTP4A2P1 Gene

Disorders for PTP4A2P1 Gene

No disorders were found for PTP4A2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PTP4A2P1 Gene

Publications for PTP4A2P1 Gene

  1. Characterization and genomic mapping of genes and pseudogenes of a new human protein tyrosine phosphatase. (PMID: 8661118) Zhao Z … Caskey CT (Genomics 1996) 2 3
  2. Localization of the human phosphotyrosine phosphatase-related genes (h-PRL-1) to chromosome bands 1p35-p34, 17q12-q21, 11q24-q25 and 12q24. (PMID: 8931711) Montagna M … Lenoir GM (Human genetics 1996) 2 3
  3. 1H, 15N, 13C resonance assignments of the human protein tyrosine phosphatase PRL-1. (PMID: 15213447) Laurence JS … Stauffacher CV (Journal of biomolecular NMR 2004) 3
  4. A 100-kb physical and transcriptional map around the EDH17B2 gene: identification of three novel genes and a pseudogene of a human homologue of the rat PRL-1 tyrosine phosphatase. (PMID: 8529999) Montagna M … Lenoir GM (Human genetics 1995) 3

Products for PTP4A2P1 Gene

Sources for PTP4A2P1 Gene