Aliases for PTOV1-AS2 Gene

Data sources for PTOV1-AS2 Gene:

Subcategory (RNA class) for PTOV1-AS2 Gene

lncRNA

Aliases for PTOV1-AS2 Gene

External Ids for PTOV1-AS2 Gene

Summaries for PTOV1-AS2 Gene

GeneCards Summary for PTOV1-AS2 Gene

PTOV1-AS2 (PTOV1 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PTOV1-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTOV1-AS2 Gene

Genomics for PTOV1-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PTOV1-AS2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTOV1-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PTOV1-AS2 Gene

Latest Assembly
chr19:49,856,464-49,859,289
(GRCh38/hg38)
Size:
2,826 bases
Orientation:
Minus strand

Previous Assembly
chr19:50,359,722-50,362,546
(GRCh37/hg19 by Entrez Gene)
Size:
2,825 bases
Orientation:
Minus strand

chr19:50,360,227-50,362,546
(GRCh37/hg19 by Ensembl)
Size:
2,320 bases
Orientation:
Minus strand

Genomic View for PTOV1-AS2 Gene

Genes around PTOV1-AS2 on UCSC Golden Path with GeneCards custom track
PTOV1-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PTOV1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTOV1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTOV1-AS2 Gene

Proteins for PTOV1-AS2 Gene

Post-translational modifications for PTOV1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTOV1-AS2 Gene

Domains & Families for PTOV1-AS2 Gene

Gene Families for PTOV1-AS2 Gene

genes like me logo Genes that share domains with PTOV1-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTOV1-AS2 Gene

Function for PTOV1-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTOV1-AS2 Gene

Localization for PTOV1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTOV1-AS2 Gene

Pathways & Interactions for PTOV1-AS2 Gene

PathCards logo

SuperPathways for PTOV1-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PTOV1-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PTOV1-AS2 Gene

Drugs & Compounds for PTOV1-AS2 Gene

No Compound Related Data Available

Transcripts for PTOV1-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PTOV1-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000039083F_9606 lncRNA 721 4

Ensembl: ENST00000601893 (view in UCSC) ,

LncBook: HSALNT0261402,

LNCipedia: PTOV1-AS2:4,

NONCODE: NONHSAT067267.2,

URS00001C7B7A_9606 lncRNA 601 3

Ensembl: ENST00000593654 (view in UCSC) ,

LNCipedia: PTOV1-AS2:2,

NONCODE: NONHSAT067266.2,

URS00005798C2_9606 lncRNA 518 3

Ensembl: ENST00000599259 (view in UCSC) ,

LncBook: HSALNT0261403,

LNCipedia: PTOV1-AS2:5,

URS000075D2AE_9606 lncRNA 1101 1

RefSeq: NR_110730,

URS00008C0C5F_9606 lncRNA 4371 2

LNCipedia: PTOV1-AS2:1,

NONCODE: NONHSAT067264.2,

PTOV1-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PTOV1-AS2 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PTOV1-AS2 Gene

No ASD Table

Relevant External Links for PTOV1-AS2 Gene

GeneLoc Exon Structure for
PTOV1-AS2

Expression for PTOV1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PTOV1-AS2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PTOV1-AS2

genes like me logo Genes that share expression patterns with PTOV1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTOV1-AS2 Gene

Orthologs for PTOV1-AS2 Gene

Evolution for PTOV1-AS2 Gene

ENSEMBL:
Gene Tree for PTOV1-AS2 (if available)
TreeFam:
Gene Tree for PTOV1-AS2 (if available)

No data available for Orthologs for PTOV1-AS2 Gene

Paralogs for PTOV1-AS2 Gene

No data available for Paralogs for PTOV1-AS2 Gene

Variants for PTOV1-AS2 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PTOV1-AS2 Gene

SNP ID Clinical significance and condition Chr 19 pos Variation AA Info Type
rs755715265 Likely Benign: Long QT syndrome 49,857,051(-) A/T
NM_001305108.1(PTOV1):c.539A>T (p.Lys180Met)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PTOV1-AS2 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PTOV1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv53n68 CNV loss 17160897
dgv54n68 CNV loss 17160897
nsv1140251 OTHER inversion 24896259
nsv470150 CNV gain 18288195
nsv524068 CNV loss 19592680
nsv524534 CNV loss 19592680
nsv526372 CNV loss 19592680
nsv953600 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

Additional Variant Information for PTOV1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTOV1-AS2

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PTOV1-AS2 Gene

Disorders for PTOV1-AS2 Gene

Additional Disease Information for PTOV1-AS2

No disorders were found for PTOV1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PTOV1-AS2 Gene

Publications for PTOV1-AS2 Gene

No publications were found for PTOV1-AS2 Gene.

No data available for Mastermind for PTOV1-AS2 Gene

Products for PTOV1-AS2 Gene

Sources for PTOV1-AS2 Gene