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PTOV1-AS2 Gene(RNA Gene)

PTOV1 Antisense RNA 2

GCID:
GC19M049856
GIFtS:
11
Genes Participants
UDN Logo

Aliases for PTOV1-AS2 Gene

Subcategory (RNA class) for PTOV1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for PTOV1-AS2 Gene

  • PTOV1 Antisense RNA 2 2 3 5

External Ids for PTOV1-AS2 Gene

Summaries for PTOV1-AS2 Gene

GeneCards Summary for PTOV1-AS2 Gene

PTOV1-AS2 (PTOV1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for PTOV1-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PTOV1-AS2 Gene

Genomics for PTOV1-AS2 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for PTOV1-AS2 Gene

Promoters and enhancers for PTOV1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19I049857 Enhancer 1.1 FANTOM5 ENCODE 568.4 -1.4 -1435 6.7 ARNT KLF17 ZNF2 POLR2B GLIS2 ZNF366 ZNF143 KLF7 EGR2 PAF1 PTOV1-AS2 AKT1S1 PNKP PRR12 NUP62 PTOV1 FUZ ATF5 PRRG2 MYH14
GH19I048958 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 59.3 +895.3 895260 10.2 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 FTL ENSG00000267898 GC19P048966 GC19P048967 NUP62 PTOV1-AS2 IRF3 PRR12 SNORD35A SNORD35B
GH19I048871 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE dbSUPER 53.6 +983.3 983274 8.8 FEZF1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MEF2D SSRP1 GC19M048876 PPP1R15A PRR12 SNRNP70 IRF3 GRWD1 SNORD35A PTOV1-AS2 SNORD35B PIH1D1
GH19I050802 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 59.3 -945.0 -944994 4.2 HDGF HNRNPUL1 PKNOX1 SMAD1 ARNT ARID4B NEUROD1 SIN3A FEZF1 DMAP1 C19orf48 GC19M050829 GC19M050838 SNORD88C POLD1 PTOV1-AS2 NUP62 PNKP ZNF175 CTU1
GH19I050022 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 57.7 -165.5 -165532 4.5 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 SP3 ZNF473 VRK3 POLD1 PTOV1-AS2 SNORD35A NUP62 SNORD35B ALDH16A1 PNKP IRF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PTOV1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PTOV1-AS2 Gene

Genomic Locations for PTOV1-AS2 Gene
chr19:49,856,465-49,859,289
(GRCh38/hg38)
Size:
2,825 bases
Orientation:
Minus strand
chr19:50,360,227-50,362,546
(GRCh37/hg19)

Genomic View for PTOV1-AS2 Gene

Genes around PTOV1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTOV1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTOV1-AS2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PTOV1-AS2 Gene

Proteins for PTOV1-AS2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for PTOV1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTOV1-AS2 Gene

Domains & Families for PTOV1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PTOV1-AS2 Gene

Function for PTOV1-AS2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for PTOV1-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTOV1-AS2 Gene

Localization for PTOV1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTOV1-AS2 Gene

Pathways & Interactions for PTOV1-AS2 Gene

SuperPathways for PTOV1-AS2 Gene

PathCards logo More details on SuperPathways for PTOV1-AS2
No Data Available

Interacting Proteins for PTOV1-AS2 Gene

Gene Ontology (GO) - Biological Process for PTOV1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PTOV1-AS2 Gene

Drugs & Compounds for PTOV1-AS2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for PTOV1-AS2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for PTOV1-AS2 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for PTOV1-AS2 Gene

No ASD Table

Relevant External Links for PTOV1-AS2 Gene

GeneLoc Exon Structure for
PTOV1-AS2
ECgene alternative splicing isoforms for
PTOV1-AS2

Expression for PTOV1-AS2 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PTOV1-AS2 Gene

mRNA expression in normal human tissues for PTOV1-AS2 Gene
mRNA expression by GTEx for PTOV1-AS2 Gene
genes like me logo Genes that share expression patterns with PTOV1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTOV1-AS2 Gene

Orthologs for PTOV1-AS2 Gene

Evolution for PTOV1-AS2 Gene

ENSEMBL:
Gene Tree for PTOV1-AS2 (if available)
TreeFam:
Gene Tree for PTOV1-AS2 (if available)

No data available for Orthologs for PTOV1-AS2 Gene

Paralogs for PTOV1-AS2 Gene

No data available for Paralogs for PTOV1-AS2 Gene

Variants for PTOV1-AS2 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for PTOV1-AS2 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1050332 benign, uncertain-significance, not specified, Early infantile epileptic encephalopathy 10 49,861,233(-) G/A upstream_transcript_variant
rs142180374 conflicting-interpretations-of-pathogenicity, benign, not specified, Early infantile epileptic encephalopathy 12 49,861,257(-) G/A upstream_transcript_variant
rs201872477 uncertain-significance, Epileptic encephalopathy 49,861,227(-) T/A/G upstream_transcript_variant
rs755715265 likely-benign, Long QT syndrome 49,857,051(-) A/T non_coding_transcript_variant
rs778165913 likely-benign, Early infantile epileptic encephalopathy 12 49,861,249(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PTOV1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv53n68 CNV loss 17160897
dgv54n68 CNV loss 17160897
nsv1140251 OTHER inversion 24896259
nsv470150 CNV gain 18288195
nsv524068 CNV loss 19592680
nsv524534 CNV loss 19592680
nsv526372 CNV loss 19592680
nsv953600 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

Additional Variant Information for PTOV1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTOV1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PTOV1-AS2 Gene

Disorders for PTOV1-AS2 Gene

Additional Disease Information for PTOV1-AS2

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for PTOV1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PTOV1-AS2 Gene

Publications for PTOV1-AS2 Gene

No publications were found for PTOV1-AS2 Gene.

Products for PTOV1-AS2 Gene

Sources for PTOV1-AS2 Gene

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