Aliases for PTOV1-AS1 Gene

Subcategory (RNA class) for PTOV1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PTOV1-AS1 Gene

  • PTOV1 Antisense RNA 1 2 3 5
  • PTOV1-AS1 2 5 165
  • PTOV1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG026272.2 91
  • HSALNG0127037 164

External Ids for PTOV1-AS1 Gene

Previous GeneCards Identifiers for PTOV1-AS1 Gene

  • GC19M050344

Summaries for PTOV1-AS1 Gene

GeneCards Summary for PTOV1-AS1 Gene

PTOV1-AS1 (PTOV1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PTOV1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTOV1-AS1 Gene

Genomics for PTOV1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PTOV1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTOV1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PTOV1-AS1 Gene

Genomic Locations for PTOV1-AS1 Gene
chr19:49,838,639-49,851,678
(GRCh38/hg38)
Size:
13,040 bases
Orientation:
Minus strand
chr19:50,341,896-50,354,933
(GRCh37/hg19)
Size:
13,038 bases
Orientation:
Minus strand

Genomic View for PTOV1-AS1 Gene

Genes around PTOV1-AS1 on UCSC Golden Path with GeneCards custom track
PTOV1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PTOV1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTOV1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTOV1-AS1 Gene

Proteins for PTOV1-AS1 Gene

Post-translational modifications for PTOV1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTOV1-AS1 Gene

Domains & Families for PTOV1-AS1 Gene

Gene Families for PTOV1-AS1 Gene

genes like me logo Genes that share domains with PTOV1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTOV1-AS1 Gene

Function for PTOV1-AS1 Gene

Phenotypes From GWAS Catalog for PTOV1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTOV1-AS1 Gene

Localization for PTOV1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTOV1-AS1 Gene

Pathways & Interactions for PTOV1-AS1 Gene

PathCards logo

SuperPathways for PTOV1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PTOV1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PTOV1-AS1 Gene

Drugs & Compounds for PTOV1-AS1 Gene

No Compound Related Data Available

Transcripts for PTOV1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PTOV1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000C8060_9606 lncRNA 3181 4

Ensembl: ENST00000600742 (view in UCSC) ,

LncBook: HSALNT0261396,

LNCipedia: PTOV1-AS1:4,

NONCODE: NONHSAT067253.2,

URS00002F3BA8_9606 lncRNA 2155 4

Ensembl: ENST00000596521 (view in UCSC) ,

LncBook: HSALNT0261391,

LNCipedia: PTOV1-AS1:2,

NONCODE: NONHSAT067252.2,

URS000075E054_9606 lncRNA 2148 2

HGNC: 44174,

RefSeq: NR_040037,

URS00008BD840_9606 lncRNA 5967 2

LNCipedia: PTOV1-AS1:6,

NONCODE: NONHSAT067254.2,

URS0000D59441_9606 lncRNA 3184 2

LncBook: HSALNT0261395,

LNCipedia: PTOV1-AS1:10,

PTOV1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PTOV1-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PTOV1-AS1 Gene

No ASD Table

Relevant External Links for PTOV1-AS1 Gene

GeneLoc Exon Structure for
PTOV1-AS1

Expression for PTOV1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PTOV1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PTOV1-AS1

SOURCE GeneReport for Unigene cluster for PTOV1-AS1 Gene:

Hs.654814
genes like me logo Genes that share expression patterns with PTOV1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTOV1-AS1 Gene

Orthologs for PTOV1-AS1 Gene

Evolution for PTOV1-AS1 Gene

ENSEMBL:
Gene Tree for PTOV1-AS1 (if available)
TreeFam:
Gene Tree for PTOV1-AS1 (if available)

No data available for Orthologs for PTOV1-AS1 Gene

Paralogs for PTOV1-AS1 Gene

No data available for Paralogs for PTOV1-AS1 Gene

Variants for PTOV1-AS1 Gene

Additional dbSNP identifiers (rs#s) for PTOV1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PTOV1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv53n68 CNV loss 17160897
dgv54n68 CNV loss 17160897
nsv1072361 CNV deletion 25765185
nsv1118833 CNV deletion 24896259
nsv1140251 OTHER inversion 24896259
nsv1160655 CNV deletion 26073780
nsv470150 CNV gain 18288195
nsv953600 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

Additional Variant Information for PTOV1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTOV1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PTOV1-AS1 Gene

Disorders for PTOV1-AS1 Gene

No disorders were found for PTOV1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PTOV1-AS1 Gene

Publications for PTOV1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for PTOV1-AS1 Gene

Sources for PTOV1-AS1 Gene