Aliases for PTMAP12 Gene

Aliases for PTMAP12 Gene

  • Prothymosin Alpha Pseudogene 12 2 3 5
  • PTMAP12 5

External Ids for PTMAP12 Gene

Summaries for PTMAP12 Gene

GeneCards Summary for PTMAP12 Gene

PTMAP12 (Prothymosin Alpha Pseudogene 12) is a Pseudogene.

Additional gene information for PTMAP12 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTMAP12 Gene

Genomics for PTMAP12 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PTMAP12 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J094346 Enhancer 0.6 Ensembl 0.4 -6.1 -6076 15.2 DDX20 MEF2D ZNF592 NR2F1 ZBTB33 DIDO1 IRF9 TAF7 SP1 PYGO2 MFSD14B ENSG00000232063 NUTM2F ZNF169 PTMAP12 lnc-MFSD14B-2 LOC100132077 RF00017-7724
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTMAP12 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PTMAP12 Gene

Genomic Locations for PTMAP12 Gene
chr9:94,346,998-94,347,725
(GRCh38/hg38)
Size:
728 bases
Orientation:
Minus strand
chr9:97,109,516-97,109,845
(GRCh37/hg19)
Size:
330 bases
Orientation:
Minus strand

Genomic View for PTMAP12 Gene

Genes around PTMAP12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTMAP12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTMAP12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTMAP12 Gene

Proteins for PTMAP12 Gene

Post-translational modifications for PTMAP12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTMAP12 Gene

Domains & Families for PTMAP12 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTMAP12 Gene

Function for PTMAP12 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTMAP12 Gene

Localization for PTMAP12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTMAP12 Gene

Pathways & Interactions for PTMAP12 Gene

PathCards logo

SuperPathways for PTMAP12 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PTMAP12 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PTMAP12 Gene

Drugs & Compounds for PTMAP12 Gene

No Compound Related Data Available

Transcripts for PTMAP12 Gene

mRNA/cDNA for PTMAP12 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PTMAP12 Gene

No ASD Table

Relevant External Links for PTMAP12 Gene

GeneLoc Exon Structure for
PTMAP12

Expression for PTMAP12 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTMAP12 Gene

Orthologs for PTMAP12 Gene

This gene was present in the common ancestor of mammals.

Orthologs for PTMAP12 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC750206 30
  • 98.67 (n)
Dog
(Canis familiaris)
Mammalia LOC611067 30
  • 81.04 (n)
Species where no ortholog for PTMAP12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for PTMAP12 Gene

ENSEMBL:
Gene Tree for PTMAP12 (if available)
TreeFam:
Gene Tree for PTMAP12 (if available)

Paralogs for PTMAP12 Gene

No data available for Paralogs for PTMAP12 Gene

Variants for PTMAP12 Gene

Additional Variant Information for PTMAP12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTMAP12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PTMAP12 Gene

Disorders for PTMAP12 Gene

No disorders were found for PTMAP12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PTMAP12 Gene

Publications for PTMAP12 Gene

  1. A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. (PMID: 26638075) Gupta GD … Pelletier L (Cell 2015) 3

Products for PTMAP12 Gene

Sources for PTMAP12 Gene