Aliases for PTMAP1 Gene

Aliases for PTMAP1 Gene

  • Prothymosin Alpha Pseudogene 1 2 3 5
  • Prothymosin, Alpha Pseudogene 1 (Gene Sequence 26) 2 3
  • Prothymosin, Alpha Pseudogene 1 2

External Ids for PTMAP1 Gene

Previous GeneCards Identifiers for PTMAP1 Gene

  • GC00U990289
  • GC06U900705
  • GC06P030709
  • GC06Pc30739
  • GC06P030602
  • GC06P030404
  • GC06Pj30592
  • GC06P030603
  • GC06P030607
  • GC06P030639
  • GC06P030634
  • GC06P032279
  • GC06P032469
  • GC06P032579
  • GC06P030637
  • GC06P030808
  • GC06P030801
  • GC06P030900
  • GC06P031061
  • GC06P031207
  • GC06P031414
  • GC06P032053

Summaries for PTMAP1 Gene

GeneCards Summary for PTMAP1 Gene

PTMAP1 (Prothymosin Alpha Pseudogene 1) is a Pseudogene.

Additional gene information for PTMAP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTMAP1 Gene

Genomics for PTMAP1 Gene

GeneHancer (GH) Regulatory Elements for PTMAP1 Gene

Promoters and enhancers for PTMAP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J030735 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 12.1 +103.7 103660 2.9 ZBTB40 EP300 AFF1 RELA TRIM22 BCL11A ZNF384 USF2 CTCF SRF ENSG00000201988 PTMAP1 ATAT1 MRPS18B PPP1R10 MDC1-AS1 PSORS1C2 C6orf136 DHX16 VARS2
GH06J030541 Promoter/Enhancer 1.4 ENCODE CraniofacialAtlas dbSUPER 11.5 -90.5 -90549 3.7 RXRA ZNF217 CTCF NRF1 JUND GABPA TRIM28 SAP30 RFX1 REST ABCF1 LINC02569 MIR877 MRPS18B PPP1R10 ATAT1 PTMAP1 C6orf136 HLA-C HCG4
GH06J030597 Enhancer 1 Ensembl ENCODE 12.8 -35.2 -35199 2.3 FOXK2 CTCF POLR2G BCLAF1 ZFX ZNF639 POLR2A REST RAD21 TRIM22 RF00017-5398 MICD ABCF1 PPP1R10 ATAT1 PTMAP1 VARS2 PRR3 GNL1 C6orf136
GH06J030655 Enhancer 0.8 Ensembl ENCODE 12.3 +23.5 23494 2.1 TBX3 FOXA2 SPI1 ZFHX2 ZGPAT BCL6 HOMEZ RARA KDM1A ZNF792 DHX16 PTMAP1 ATAT1 MRPS18B PPP1R10 MDC1 MIR877 ABCF1 lnc-PPP1R18-3 C6orf136
GH06J030601 Enhancer 0.8 ENCODE dbSUPER 12.8 -31.8 -31842 0.9 POLR2G POLR2A RBM22 TAF15 SMAD5 PAF1 AGO2 AGO1 RBM39 HNRNPL ATAT1 PTMAP1 PRR3 GNL1 C6orf136 MDC1-AS1 MDC1 IFITM4P lnc-GNL1-1 RF00017-5398
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTMAP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PTMAP1 Gene

Genomic Locations for PTMAP1 Gene
chr6:30,633,450-30,635,237
(GRCh38/hg38)
Size:
1,788 bases
Orientation:
Plus strand
chr6:30,601,227-30,603,024
(GRCh37/hg19)
Size:
1,798 bases
Orientation:
Plus strand

Genomic View for PTMAP1 Gene

Genes around PTMAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PTMAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTMAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for PTMAP1 Gene

Post-translational modifications for PTMAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTMAP1 Gene

Domains & Families for PTMAP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTMAP1 Gene

Function for PTMAP1 Gene

Phenotypes From GWAS Catalog for PTMAP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTMAP1 Gene

Localization for PTMAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PTMAP1 Gene

Pathways & Interactions for PTMAP1 Gene

PathCards logo

SuperPathways for PTMAP1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PTMAP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PTMAP1 Gene

Drugs & Compounds for PTMAP1 Gene

No Compound Related Data Available

Transcripts for PTMAP1 Gene

mRNA/cDNA for PTMAP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for PTMAP1 Gene

No ASD Table

Relevant External Links for PTMAP1 Gene

GeneLoc Exon Structure for
PTMAP1

Expression for PTMAP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PTMAP1 Gene

genes like me logo Genes that share expression patterns with PTMAP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTMAP1 Gene

Orthologs for PTMAP1 Gene

Evolution for PTMAP1 Gene

ENSEMBL:
Gene Tree for PTMAP1 (if available)
TreeFam:
Gene Tree for PTMAP1 (if available)

No data available for Orthologs for PTMAP1 Gene

Paralogs for PTMAP1 Gene

No data available for Paralogs for PTMAP1 Gene

Variants for PTMAP1 Gene

Additional Variant Information for PTMAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTMAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PTMAP1 Gene

Disorders for PTMAP1 Gene

No disorders were found for PTMAP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PTMAP1 Gene

Publications for PTMAP1 Gene

  1. The human prothymosin alpha gene family contains several processed pseudogenes lacking deleterious lesions. (PMID: 1612591) Manrow RE … Berger SL (Genomics 1992) 2 3 23 54

Products for PTMAP1 Gene

Sources for PTMAP1 Gene