Aliases for PTH2 Gene
Aliases for PTH2 Gene
External Ids for PTH2 Gene
- HGNC: 30828
- Entrez Gene: 113091
- Ensembl: ENSG00000142538
- OMIM: 608386
- UniProtKB: Q96A98
Previous GeneCards Identifiers for PTH2 Gene
- GC19M054618
- GC19M049925
- GC19M046302
Summaries for PTH2 Gene
-
This gene encodes the precursor of a peptide hormone that shares sequence similarity with the parathyroid hormone. This gene is expressed in various regions of the brain where it plays a role in the release of pituitary hormones, anxiety and nociception. The encoded precursor protein is proteolytically processed to generate the biologically active neuropeptide. [provided by RefSeq, Jul 2015]
GeneCards Summary for PTH2 Gene
PTH2 (Parathyroid Hormone 2) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and G alpha (s) signalling events.
UniProtKB/Swiss-Prot for PTH2 Gene
-
Plays a role as a potent and selective agonist of PTH2R resulting in adenyl cyclase activation and intracellular calcium levels elevation. Induces protein kinase C beta activation, recruitment of beta-arrestin and PTH2R internalization. May inhibit cell proliferation via its action on PTH2R activation. Neuropeptide which may also have a role in spermatogenesis. May activate nociceptors and nociceptive circuits.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PTH2 Gene
Genomics for PTH2 Gene
GeneHancer (GH) Regulatory Elements for PTH2 Gene
Promoters and enhancers for PTH2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around PTH2 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the PTH2 gene promoter:
-
- AREB6
- c-Myb
- c-Myc
- GATA-2
- ITF-2
- Max1
- Tal-1beta
- TBP
- USF-1
- USF1
Genomic Locations for PTH2 Gene
Genomic Locations for PTH2 Gene
- chr19:49,422,414-49,426,263
- (GRCh38/hg38)
- Size:
- 3,850 bases
- Orientation:
- Minus strand
- chr19:49,925,671-49,926,698
- (GRCh37/hg19)
- Size:
- 1,028 bases
- Orientation:
- Minus strand
Genomic View for PTH2 Gene
Genes around PTH2 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19q13.33 by HGNC
- 19q13.33 by Entrez Gene
- 19q13.33 by Ensembl
PTH2 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for PTH2 Gene
Proteins for PTH2 Gene
-
Protein details for PTH2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q96A98-TIP39_HUMAN
- Recommended name:
- Tuberoinfundibular peptide of 39 residues
- Protein Accession:
- Q96A98
- Q96DJ4
Protein attributes for PTH2 Gene
- Size:
- 100 amino acids
- Molecular mass:
- 11202 Da
- Quaternary structure:
-
- Ligand of high affinity for the PTH2 receptor (PTH2R).
Protein Expression for PTH2 Gene
Post-translational modifications for PTH2 Gene
Other Protein References for PTH2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for PTH2
- Novus Biologicals Antibodies for PTH2
- Invitrogen Antibodies for PTH2 (AFLGC-PTH2)
-
Boster Bio Antibodies for PTH2
Protein Products
-
OriGene Purified Proteins for PTH2
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- antibodies-online: Search results for available PTH2 related products ranked by validation data
-
Abcam proteins for PTH2
No data available for DME Specific Peptides for PTH2 Gene
Domains & Families for PTH2 Gene
Gene Families for PTH2 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted secreted proteins
Suggested Antigen Peptide Sequences for PTH2 Gene
- GenScript: Design optimal peptide antigens:
-
- Parathyroid hormone 2 (TIP39_HUMAN)
Graphical View of Domain Structure for InterPro Entry
Q96A98- Family:
-
- Belongs to the parathyroid hormone family.
Function for PTH2 Gene
Molecular function for PTH2 Gene
- UniProtKB/Swiss-Prot Function:
- Plays a role as a potent and selective agonist of PTH2R resulting in adenyl cyclase activation and intracellular calcium levels elevation. Induces protein kinase C beta activation, recruitment of beta-arrestin and PTH2R internalization. May inhibit cell proliferation via its action on PTH2R activation. Neuropeptide which may also have a role in spermatogenesis. May activate nociceptors and nociceptive circuits.
Phenotypes From GWAS Catalog for PTH2 Gene
Phenotypes for PTH2 Gene
- MGI mutant phenotypes for PTH2:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for PTH2:
Animal Models for PTH2 Gene
- MGI Knock Outs for PTH2:
-
- Pth2 Pth2<tm1Vlcg>
Animal Model Products
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-
CRISPR Products
-
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-
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miRNA for PTH2 Gene
- miRTarBase miRNAs that target PTH2
miRNA Products
Inhibitory RNA Products
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Clone Products
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for PTH2
- Addgene plasmids for PTH2
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- genomics-online: cdna clones - Search results for available PTH2 gene related products
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Cell Line Products
-
Horizon Cell Lines for PTH2
No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PTH2 Gene
Localization for PTH2 Gene
Subcellular locations from UniProtKB/Swiss-Prot for PTH2 Gene
- Secreted.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005576 | extracellular region | TAS | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for PTH2 Gene
Pathways & Interactions for PTH2 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Signaling by GPCR | ||
| 2 | Peptide ligand-binding receptors | ||
| 3 | Presynaptic function of Kainate receptors | ||
| 4 | G alpha (s) signalling events | ||
Pathways by source for PTH2 Gene
6 Reactome pathways for PTH2 Gene
1 KEGG pathway for PTH2 Gene
Interacting Proteins for PTH2 Gene
GPS-Prot Interaction Network for PTH2
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | TAS | -- |
| GO:0007218 | neuropeptide signaling pathway | IEA | -- |
Drugs & Compounds for PTH2 Gene
(1) ApexBio Compounds for PTH2 Gene
| Compound | Action | Cas Number |
|---|---|---|
| Parathyroid Hormone (1-34), bovine | Enhancer of blood calcium level | 12583-68-5 |
Transcripts for PTH2 Gene
mRNA/cDNA for PTH2 Gene
- (1) REFSEQ mRNAs :
- (4) Additional mRNA sequences :
- (3) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000270631 459 bps (ENST00000270631.1)
CRISPR Products
-
OriGene CRISPR knockouts for PTH2
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for PTH2
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- * PTH2 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * PTH2 CRISPR applications: KO, Activation, Repression, and more - Browse All
-
Santa Cruz Biotechnology (SCBT) CRISPR for PTH2
miRNA Products
Inhibitory RNA Products
- Origene sirna, shrna, and RNAi products in human, mouse, rat for PTH2
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- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PTH2
- genomics-online: shRNA clones - Search results for available PTH2 gene related products
Clone Products
-
- MG219795
- MR219795
- MR219795L1
- MR219795L1V
- MR219795L2
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- MR219795L3
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- MR219795L4
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- RC510906
- RG210906
- RR205374
- RR205374L1
- RR205374L1V
- RR205374L2
- RR205374L2V
- RR205374L3
- RR205374L3V
- RR205374L4
- RR205374L4V
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for PTH2
- Addgene plasmids for PTH2
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for PTH2
- genomics-online: cdna clones - Search results for available PTH2 gene related products
- orf clones - Search results for available PTH2 gene related products
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- * PTH2 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
Expression for PTH2 Gene
mRNA differential expression in normal tissues according to GTEx for PTH2 Gene
This gene is overexpressed in Brain - Cerebellar Hemisphere (x19.2), Brain - Cerebellum (x17.4), and Testis (x6.6).
This gene is overexpressed in Adipocyte (68.4).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PTH2 Gene
NURSA nuclear receptor signaling pathways regulating expression of PTH2 Gene:
PTH2SOURCE GeneReport for Unigene cluster for PTH2 Gene:
Hs.339845mRNA Expression by UniProt/SwissProt for PTH2 Gene:
Q96A98-TIP39_HUMAN
Tissue specificity:
Highly expressed in fetal and adult brain, cerebellum and trachea. Weakly expressed in spinal cord, fetal liver, kidney and heart.
Evidence on tissue expression from TISSUES for PTH2 Gene
- Nervous system(4.3)
Primer Products
-
OriGene qPCR primer pairs for PTH2
-
OriGene qPCR primer pairs and template standards for PTH2
- genomics-online: primer clones - Search results for available PTH2 gene related products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTH2 Gene
Orthologs for PTH2 Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| dog (Canis familiaris) |
Mammalia | PTH2 35 34 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | PTH2 35 34 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Pth2 17 35 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Pth2 34 |
|
- Species where no ortholog for PTH2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- chimpanzee (Pan troglodytes)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Evolution for PTH2 Gene
- ENSEMBL:
- Gene Tree for PTH2 (if available)
- TreeFam:
- Gene Tree for PTH2 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for PTH2: view image
Paralogs for PTH2 Gene
No data available for Paralogs for PTH2 Gene
Variants for PTH2 Gene
| SNP ID | Clin | Chr 19 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000815440 | -- | 49,423,092(-) | G/A | intron_variant | |
| rs1001251373 | -- | 49,423,603(-) | A/C | upstream_transcript_variant | |
| rs1002024467 | -- | 49,423,638(-) | G/A | upstream_transcript_variant | |
| rs1002919579 | -- | 49,422,673(-) | G/T | intron_variant | |
| rs1003177082 | -- | 49,424,633(-) | T/C | upstream_transcript_variant |
Residual Variation Intolerance Score:
77.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.83;
34.41% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for PTH2 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- PTH2
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PTH2 Gene
Disorders for PTH2 Gene
Additional Disease Information for PTH2
No disorders were found for PTH2 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PTH2 Gene
Publications for PTH2 Gene
- Identification and characterization of the murine and human gene encoding the tuberoinfundibular peptide of 39 residues. (PMID: 11861531) John MR … Jüppner H (Endocrinology 2002) 2 3 4 23 58
- PTH2 receptor-mediated inhibitory effect of parathyroid hormone and TIP39 on cell proliferation. (PMID: 12754053) Misiano P … Garnier M (European journal of pharmacology 2003) 3 4 23 58
- Parathyroid hormone 2 receptor and its endogenous ligand tuberoinfundibular peptide of 39 residues are concentrated in endocrine, viscerosensory and auditory brain regions in macaque and human. (PMID: 19401215) Bagó AG … Dobolyi A (Neuroscience 2009) 3 23 58
- Agonist-specific regulation of parathyroid hormone (PTH) receptor type 2 activity: structural and functional analysis of PTH- and tuberoinfundibular peptide (TIP) 39-stimulated desensitization and internalization. (PMID: 14988434) Bisello A … Ferrari SL (Molecular endocrinology (Baltimore, Md.) 2004) 3 4 58
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
ExternalLinks
Products for PTH2 Gene
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Sources for PTH2 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
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