Aliases for PTGES2-AS1 Gene

Data sources for PTGES2-AS1 Gene:

RNA type for PTGES2-AS1 Gene

lncRNA

Aliases for PTGES2-AS1 Gene

External Ids for PTGES2-AS1 Gene

Previous GeneCards Identifiers for PTGES2-AS1 Gene

  • GC09P130893

Summaries for PTGES2-AS1 Gene

GeneCards Summary for PTGES2-AS1 Gene

PTGES2-AS1 (PTGES2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PTGES2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PTGES2-AS1 Gene

Genomics for PTGES2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PTGES2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PTGES2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PTGES2-AS1 Gene

Latest Assembly
chr9:128,128,528-128,130,634
(GRCh38/hg38)
Size:
2,107 bases
Orientation:
Plus strand

Previous Assembly
chr9:130,890,808-130,892,913
(GRCh37/hg19 by Entrez Gene)
Size:
2,106 bases
Orientation:
Plus strand

chr9:130,890,612-130,891,481
(GRCh37/hg19 by Ensembl)
Size:
870 bases
Orientation:
Plus strand

Genomic View for PTGES2-AS1 Gene

Genes around PTGES2-AS1 on UCSC Golden Path with GeneCards custom track
PTGES2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PTGES2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PTGES2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PTGES2-AS1 Gene

Proteins for PTGES2-AS1 Gene

Post-translational modifications for PTGES2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PTGES2-AS1 Gene

Domains & Families for PTGES2-AS1 Gene

Gene Families for PTGES2-AS1 Gene

genes like me logo Genes that share domains with PTGES2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PTGES2-AS1 Gene

Function for PTGES2-AS1 Gene

Phenotypes From GWAS Catalog for PTGES2-AS1 Gene

Gene Ontology (GO) - Molecular Function for PTGES2-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 32814053
genes like me logo Genes that share ontologies with PTGES2-AS1: view
genes like me logo Genes that share phenotypes with PTGES2-AS1: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PTGES2-AS1 Gene

Localization for PTGES2-AS1 Gene

Gene Ontology (GO) - Cellular Components for PTGES2-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with PTGES2-AS1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for PTGES2-AS1 Gene

Pathways & Interactions for PTGES2-AS1 Gene

PathCards logo

SuperPathways for PTGES2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PTGES2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PTGES2-AS1 Gene

Drugs & Compounds for PTGES2-AS1 Gene

No Compound Related Data Available

Transcripts for PTGES2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PTGES2-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000811EFA_9606 lncRNA 2100 2

Ensembl: ENST00000443493 (view in UCSC) ,

LNCipedia: lnc-LCN2-1:4,

URS000075E00F_9606 lncRNA 2106 1

RefSeq: NR_024425,

URS00009B321E_9606 lncRNA 2107 2

LNCipedia: lnc-LCN2-1:3,

NONCODE: NONHSAT134905.2,

PTGES2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PTGES2-AS1 Gene

1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PTGES2-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for PTGES2-AS1 Gene

No ASD Table

Relevant External Links for PTGES2-AS1 Gene

GeneLoc Exon Structure for
PTGES2-AS1

Expression for PTGES2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PTGES2-AS1 Gene

Protein differential expression in normal tissues from HIPED for PTGES2-AS1 Gene

This gene is overexpressed in Serum (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for PTGES2-AS1 Gene



Protein tissue co-expression partners for PTGES2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PTGES2-AS1

genes like me logo Genes that share expression patterns with PTGES2-AS1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PTGES2-AS1 Gene

Orthologs for PTGES2-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for PTGES2-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 30
  • 96 (a)
OneToOne
Species where no ortholog for PTGES2-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for PTGES2-AS1 Gene

ENSEMBL:
Gene Tree for PTGES2-AS1 (if available)
TreeFam:
Gene Tree for PTGES2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PTGES2-AS1

Paralogs for PTGES2-AS1 Gene

No data available for Paralogs for PTGES2-AS1 Gene

Variants for PTGES2-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PTGES2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PTGES2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4142n106 CNV duplication 24896259
nsv1078654 CNV duplication 25765185
nsv1150718 CNV duplication 26484159
nsv471324 CNV gain 18288195
nsv615383 CNV loss 21841781
nsv6723 CNV deletion 18451855
nsv818724 CNV loss 17921354
nsv951769 CNV deletion 24416366
nsv951770 CNV duplication 24416366

Additional Variant Information for PTGES2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PTGES2-AS1
Leiden Open Variation Database (LOVD)
PTGES2-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PTGES2-AS1 Gene

Disorders for PTGES2-AS1 Gene

Additional Disease Information for PTGES2-AS1

No disorders were found for PTGES2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PTGES2-AS1 Gene

Publications for PTGES2-AS1 Gene

  1. Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains. (PMID: 32814053) Haenig C … Wanker EE (Cell reports 2020) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for PTGES2-AS1 Gene

Sources for PTGES2-AS1 Gene