Aliases for PSMG3-AS1 Gene

Subcategory (RNA class) for PSMG3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for PSMG3-AS1 Gene

  • PSMG3 Antisense RNA 1 (Head To Head) 2 3 5
  • PSMG3-AS1 2 168
  • Putative Uncharacterized Protein PSMG3-AS1 4
  • PSMG3 Antisense RNA 1 4
  • NONHSAG046774 92
  • HSALNG0055664 167
  • KIAA1908 4

External Ids for PSMG3-AS1 Gene

Previous GeneCards Identifiers for PSMG3-AS1 Gene

  • GC07P001615

Summaries for PSMG3-AS1 Gene

GeneCards Summary for PSMG3-AS1 Gene

PSMG3-AS1 (PSMG3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PSMG3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PSMG3-AS1 Gene

Genomics for PSMG3-AS1 Gene

GeneHancer (GH) Regulatory Elements for PSMG3-AS1 Gene

Promoters and enhancers for PSMG3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PSMG3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PSMG3-AS1 Gene

Genomic Locations for PSMG3-AS1 Gene
chr7:1,570,073-1,622,683
(GRCh38/hg38)
Size:
52,611 bases
Orientation:
Plus strand
chr7:1,609,709-1,629,262
(GRCh37/hg19)
Size:
19,554 bases
Orientation:
Plus strand

Genomic View for PSMG3-AS1 Gene

Genes around PSMG3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSMG3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSMG3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSMG3-AS1 Gene

Proteins for PSMG3-AS1 Gene

  • Protein details for PSMG3-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96PY0-K1908_HUMAN
    Recommended name:
    Putative uncharacterized protein PSMG3-AS1
    Protein Accession:
    Q96PY0
    Secondary Accessions:
    • Q8NAR8
    • Q8NBC0

    Protein attributes for PSMG3-AS1 Gene

    Size:
    264 amino acids
    Molecular mass:
    28245 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB67801.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};

neXtProt entry for PSMG3-AS1 Gene

Post-translational modifications for PSMG3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PSMG3-AS1 Gene

Domains & Families for PSMG3-AS1 Gene

Protein Domains for PSMG3-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with PSMG3-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PSMG3-AS1 Gene

Function for PSMG3-AS1 Gene

Phenotypes From GWAS Catalog for PSMG3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PSMG3-AS1 Gene

Localization for PSMG3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PSMG3-AS1 Gene

Pathways & Interactions for PSMG3-AS1 Gene

PathCards logo

SuperPathways for PSMG3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PSMG3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PSMG3-AS1 Gene

Drugs & Compounds for PSMG3-AS1 Gene

No Compound Related Data Available

Transcripts for PSMG3-AS1 Gene

mRNA/cDNA for PSMG3-AS1 Gene

37 RNACentral transcripts :
3 REFSEQ mRNAs :
11 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
17 NONCODE transcripts :
6 LncBook transcripts :
31 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PSMG3-AS1 Gene

No ASD Table

Relevant External Links for PSMG3-AS1 Gene

GeneLoc Exon Structure for
PSMG3-AS1

Expression for PSMG3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PSMG3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PSMG3-AS1

SOURCE GeneReport for Unigene cluster for PSMG3-AS1 Gene:

Hs.436146
genes like me logo Genes that share expression patterns with PSMG3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PSMG3-AS1 Gene

Orthologs for PSMG3-AS1 Gene

Evolution for PSMG3-AS1 Gene

ENSEMBL:
Gene Tree for PSMG3-AS1 (if available)
TreeFam:
Gene Tree for PSMG3-AS1 (if available)

No data available for Orthologs for PSMG3-AS1 Gene

Paralogs for PSMG3-AS1 Gene

No data available for Paralogs for PSMG3-AS1 Gene

Variants for PSMG3-AS1 Gene

Additional dbSNP identifiers (rs#s) for PSMG3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for PSMG3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1070717 CNV deletion 17803354
esv2733774 CNV deletion 23290073
esv2742352 CNV deletion 23290073
esv2759499 CNV loss 17122850
nsv1074998 CNV deletion 25765185
nsv1078257 CNV insertion 25765185
nsv1130860 CNV deletion 24896259
nsv1146326 CNV deletion 26484159
nsv1153516 CNV deletion 26484159
nsv5615 CNV deletion 18451855
nsv605820 CNV loss 21841781
nsv830879 CNV gain+loss 17160897
nsv830880 CNV loss 17160897
nsv950786 CNV deletion 24416366

Additional Variant Information for PSMG3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSMG3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for PSMG3-AS1 Gene

Disorders for PSMG3-AS1 Gene

Additional Disease Information for PSMG3-AS1

No disorders were found for PSMG3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PSMG3-AS1 Gene

Publications for PSMG3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 54
  2. Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. (PMID: 11572484) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2001) 3 4 54
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for PSMG3-AS1 Gene

Sources for PSMG3-AS1 Gene