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Aliases for PSMB8-AS1 Gene

Subcategory (RNA class) for PSMB8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for PSMB8-AS1 Gene

  • PSMB8 Antisense RNA 1 (Head To Head) 2 3 5
  • TAP1 And PSMB8 Antisense RNA 1 2 3
  • XXbac-BPG246D15.8 3
  • TAP1-AS1 3
  • TAPSAR1 3

External Ids for PSMB8-AS1 Gene

Previous HGNC Symbols for PSMB8-AS1 Gene

  • TAPSAR1

Summaries for PSMB8-AS1 Gene

GeneCards Summary for PSMB8-AS1 Gene

PSMB8-AS1 (PSMB8 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with PSMB8-AS1 include Astrocytoma and Nakajo Syndrome.

Additional gene information for PSMB8-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSMB8-AS1 Gene

Genomics for PSMB8-AS1 Gene

GeneHancer (GH) Regulatory Elements for PSMB8-AS1 Gene

Promoters and enhancers for PSMB8-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J032837 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 658 -1.8 -1847 9.8 HDGF PKNOX1 SMAD1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 PSMB9 PSMB8-AS1 PSMB8 TAP2 HLA-DMA BRD2 VPS52 TAP1 DAXX LEMD2
GH06J032965 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 11.1 +126.6 126583 10.4 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 ZNF263 BRD2 HLA-DMA ENSG00000223837 LEMD2 ATF6B VPS52 RXRB DAXX WDR46 HCG25
GH06J033198 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.2 +356.9 356915 4 MLX FEZF1 DMAP1 YY1 E2F8 ZNF143 SP3 NFYC SSRP1 ZNF610 RXRB RNY4P10 GC06P033199 SLC39A7 DAXX BRD2 WDR46 RGL2 LEMD2 RPS18
GH06J032126 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.2 -715.0 -714993 4.5 CLOCK ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 ZNF548 SP3 NFYC ATF6B FKBPL VARS BAG6 BRD2 GPANK1 LSM2 CSNK2B DDX39B LY6G5B
GH06J033390 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.2 +548.6 548559 4.4 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 KIFC1 DAXX BRD2 LEMD2 RXRB RGL2 WDR46 VPS52 RPS18 HLA-DOB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PSMB8-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PSMB8-AS1 Gene

Genomic Locations for PSMB8-AS1 Gene
chr6:32,844,086-32,846,500
(GRCh38/hg38)
Size:
2,415 bases
Orientation:
Plus strand
chr6:32,811,863-32,814,277
(GRCh37/hg19)
Size:
2,415 bases
Orientation:
Plus strand

Genomic View for PSMB8-AS1 Gene

Genes around PSMB8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSMB8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSMB8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for PSMB8-AS1 Gene

Post-translational modifications for PSMB8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PSMB8-AS1 Gene

Domains & Families for PSMB8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PSMB8-AS1 Gene

Function for PSMB8-AS1 Gene

Phenotypes From GWAS Catalog for PSMB8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PSMB8-AS1 Gene

Localization for PSMB8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PSMB8-AS1 Gene

Pathways & Interactions for PSMB8-AS1 Gene

SuperPathways for PSMB8-AS1 Gene

No Data Available

Interacting Proteins for PSMB8-AS1 Gene

Gene Ontology (GO) - Biological Process for PSMB8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PSMB8-AS1 Gene

Drugs & Compounds for PSMB8-AS1 Gene

No Compound Related Data Available

Transcripts for PSMB8-AS1 Gene

mRNA/cDNA for PSMB8-AS1 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(10) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PSMB8-AS1 Gene

No ASD Table

Relevant External Links for PSMB8-AS1 Gene

GeneLoc Exon Structure for
PSMB8-AS1
ECgene alternative splicing isoforms for
PSMB8-AS1

Expression for PSMB8-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PSMB8-AS1 Gene

Orthologs for PSMB8-AS1 Gene

Evolution for PSMB8-AS1 Gene

ENSEMBL:
Gene Tree for PSMB8-AS1 (if available)
TreeFam:
Gene Tree for PSMB8-AS1 (if available)

No data available for Orthologs for PSMB8-AS1 Gene

Paralogs for PSMB8-AS1 Gene

No data available for Paralogs for PSMB8-AS1 Gene

Variants for PSMB8-AS1 Gene

Sequence variations from dbSNP and Humsavar for PSMB8-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs114772012 conflicting-interpretations-of-pathogenicity, Nakajo syndrome 32,843,975(+) C/T upstream_transcript_variant
rs11540143 benign, Nakajo syndrome 32,842,170(+) G/A upstream_transcript_variant
rs116638337 benign, Nakajo syndrome 32,843,015(+) G/T upstream_transcript_variant
rs17220206 benign, Nakajo syndrome 32,843,017(+) T/A/C upstream_transcript_variant
rs2071542 likely-benign, Nakajo syndrome 32,843,868(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PSMB8-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1119076 CNV deletion 24896259
nsv830633 CNV loss 17160897

Additional Variant Information for PSMB8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSMB8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PSMB8-AS1 Gene

Disorders for PSMB8-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for PSMB8-AS1 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
nakajo syndrome
  • nodular erythema digital changes
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for PSMB8-AS1

genes like me logo Genes that share disorders with PSMB8-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PSMB8-AS1 Gene

Publications for PSMB8-AS1 Gene

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 58
  2. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3 58

Products for PSMB8-AS1 Gene

Sources for PSMB8-AS1 Gene

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