Aliases for PSMA3-AS1 Gene

Subcategory (RNA class) for PSMA3-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for PSMA3-AS1 Gene

  • PSMA3 Antisense RNA 1 2 3 5
  • PSMA3-AS1 2 168
  • HSALNG0101614 167

External Ids for PSMA3-AS1 Gene

Previous GeneCards Identifiers for PSMA3-AS1 Gene

  • GC14M058265

Summaries for PSMA3-AS1 Gene

GeneCards Summary for PSMA3-AS1 Gene

PSMA3-AS1 (PSMA3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PSMA3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PSMA3-AS1 Gene

Genomics for PSMA3-AS1 Gene

GeneHancer (GH) Regulatory Elements for PSMA3-AS1 Gene

Promoters and enhancers for PSMA3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PSMA3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PSMA3-AS1 Gene

Genomic Locations for PSMA3-AS1 Gene
chr14:58,139,101-58,299,093
(GRCh38/hg38)
Size:
159,993 bases
Orientation:
Minus strand
chr14:58,732,083-58,764,855
(GRCh37/hg19)
Size:
32,773 bases
Orientation:
Minus strand

Genomic View for PSMA3-AS1 Gene

Genes around PSMA3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSMA3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSMA3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSMA3-AS1 Gene

Proteins for PSMA3-AS1 Gene

Post-translational modifications for PSMA3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PSMA3-AS1 Gene

Domains & Families for PSMA3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PSMA3-AS1 Gene

Function for PSMA3-AS1 Gene

Phenotypes From GWAS Catalog for PSMA3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PSMA3-AS1 Gene

Localization for PSMA3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PSMA3-AS1 Gene

Pathways & Interactions for PSMA3-AS1 Gene

PathCards logo

SuperPathways for PSMA3-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for PSMA3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PSMA3-AS1 Gene

Drugs & Compounds for PSMA3-AS1 Gene

No Compound Related Data Available

Transcripts for PSMA3-AS1 Gene

mRNA/cDNA for PSMA3-AS1 Gene

45 RNACentral transcripts :
2 REFSEQ mRNAs :
10 NCBI additional mRNA sequence :
16 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
28 LncBook transcripts :
42 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PSMA3-AS1 Gene

No ASD Table

Relevant External Links for PSMA3-AS1 Gene

GeneLoc Exon Structure for
PSMA3-AS1

Expression for PSMA3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PSMA3-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PSMA3-AS1

genes like me logo Genes that share expression patterns with PSMA3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PSMA3-AS1 Gene

Orthologs for PSMA3-AS1 Gene

Evolution for PSMA3-AS1 Gene

ENSEMBL:
Gene Tree for PSMA3-AS1 (if available)
TreeFam:
Gene Tree for PSMA3-AS1 (if available)

No data available for Orthologs for PSMA3-AS1 Gene

Paralogs for PSMA3-AS1 Gene

No data available for Paralogs for PSMA3-AS1 Gene

Variants for PSMA3-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PSMA3-AS1 Gene

SNP ID Clinical significance and condition Chr 14 pos Variation AA Info Type
rs1555353410 Pathogenic: PROTEASOME-ASSOCIATED AUTOINFLAMMATORY SYNDROME 1, DIGENIC 58,270,970(-) TAAG/T NON_CODING_TRANSCRIPT_VARIANT,INFRAME_DELETION

Additional dbSNP identifiers (rs#s) for PSMA3-AS1 Gene

Additional Variant Information for PSMA3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSMA3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PSMA3-AS1 Gene

Disorders for PSMA3-AS1 Gene

Additional Disease Information for PSMA3-AS1

No disorders were found for PSMA3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PSMA3-AS1 Gene

Publications for PSMA3-AS1 Gene

  1. Co-expression Network Analysis of Human lncRNAs and Cancer Genes. (PMID: 25392693) Cogill SB … Wang L (Cancer informatics 2014) 2 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for PSMA3-AS1 Gene

Sources for PSMA3-AS1 Gene