PSMA1 Gene (Protein Coding)

Proteasome 20S Subunit Alpha 1

GC11M014505
GIFtS:
45
The proteasome is a multicatalytic proteinase complex with a highly ordered ring-shaped 20S core structure. The core structure is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiq... See more...

Aliases for PSMA1 Gene

Aliases for PSMA1 Gene

  • Proteasome 20S Subunit Alpha 1 2 3 5
  • PROS30 2 3 4
  • HC2 2 3 4
  • NU 2 3 4
  • Proteasome (Prosome, Macropain) Subunit, Alpha Type, 1 2 3
  • Multicatalytic Endopeptidase Complex Subunit C2 3 4
  • Proteasome Subunit Alpha Type-1 3 4
  • Proteasome Subunit Alpha 1 2 3
  • 30 KDa Prosomal Protein 3 4
  • Proteasome Component C2 3 4
  • Macropain Subunit C2 3 4
  • Proteasome Nu Chain 3 4
  • PROS-30 3 4
  • Epididymis Secretory Protein Li 275 3
  • Proteasome Subunit, Alpha-Type, 1 3
  • Testicular Tissue Protein Li 150 3
  • Proteasome Subunit Alpha 6 3
  • Proteasome Subunit Α6 2
  • Proteasome Subunit Nu 3
  • Macropain Subunit Nu 3
  • Protein P30-33K 3
  • EC 3.4.25.1 51
  • HEL-S-275 3
  • MGC14542 2
  • MGC14575 2
  • MGC14751 2
  • MGC21459 2
  • MGC22853 2
  • MGC23915 2
  • MGC1667 2
  • PSMA1 5
  • PSC2 4

External Ids for PSMA1 Gene

Previous GeneCards Identifiers for PSMA1 Gene

  • GC11M015706
  • GC11M015274
  • GC11M014565
  • GC11M014490
  • GC11M014482
  • GC11M014207
  • GC11M014526

Summaries for PSMA1 Gene

Entrez Gene Summary for PSMA1 Gene

  • The proteasome is a multicatalytic proteinase complex with a highly ordered ring-shaped 20S core structure. The core structure is composed of 4 rings of 28 non-identical subunits; 2 rings are composed of 7 alpha subunits and 2 rings are composed of 7 beta subunits. Proteasomes are distributed throughout eukaryotic cells at a high concentration and cleave peptides in an ATP/ubiquitin-dependent process in a non-lysosomal pathway. An essential function of a modified proteasome, the immunoproteasome, is the processing of class I MHC peptides. This gene encodes a member of the peptidase T1A family, that is a 20S core alpha subunit. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, Jan 2009]

GeneCards Summary for PSMA1 Gene

PSMA1 (Proteasome 20S Subunit Alpha 1) is a Protein Coding gene. Diseases associated with PSMA1 include Hemangioma Of Spleen and Cystic Fibrosis. Among its related pathways are Downstream signaling events of B Cell Receptor (BCR) and CDK-mediated phosphorylation and removal of Cdc6. Gene Ontology (GO) annotations related to this gene include RNA binding and threonine-type endopeptidase activity. An important paralog of this gene is ENSG00000256206.

UniProtKB/Swiss-Prot Summary for PSMA1 Gene

  • Component of the 20S core proteasome complex involved in the proteolytic degradation of most intracellular proteins. This complex plays numerous essential roles within the cell by associating with different regulatory particles. Associated with two 19S regulatory particles, forms the 26S proteasome and thus participates in the ATP-dependent degradation of ubiquitinated proteins. The 26S proteasome plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins that could impair cellular functions, and by removing proteins whose functions are no longer required. Associated with the PA200 or PA28, the 20S proteasome mediates ubiquitin-independent protein degradation. This type of proteolysis is required in several pathways including spermatogenesis (20S-PA200 complex) or generation of a subset of MHC class I-presented antigenic peptides (20S-PA28 complex).

Gene Wiki entry for PSMA1 Gene

Additional gene information for PSMA1 Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PSMA1 Gene

Genomics for PSMA1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for PSMA1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J014642 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.7 -1728 6 TBP FEZF1 MNT SMAD5 BHLHE40 NONO ZIC2 CEBPB ZNF513 SIN3A PSMA1 PDE3B lnc-PSMA1-1 COPB1 piR-50437-070 CYP2R1
GH11J014518 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 250.1 +123.7 123726 3 CHD2 TBP MXD4 SP1 CEBPA SIX5 NR2C1 MNT IKZF1 SMAD5 ENSG00000256206 lnc-PDE3B-6 lnc-PSMA1-2 PSMA1 COPB1 SPON1 RRAS2
GH11J014513 Promoter 0.3 EPDnew 250.1 +130.1 130111 0.1 PSMA1 RNU7-49P ENSG00000256206 lnc-PSMA1-2 COPB1
GH11J014611 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 12 +29.6 29555 9 HOMEZ FOXA2 SAP130 RXRA JUND SPI1 HNF4A RAD21 ZNF3 ZNF652 PDE3B PSMA1 COPB1 HSALNG0082823 lnc-PDE3B-3 lnc-PSMA1-1 ENSG00000256206
GH11J014618 Enhancer 1 ENCODE dbSUPER 11.8 +23.8 23757 2 CEBPA FOXA1 HOMEZ KDM6A FOXA2 SMAD4 MAFF SAP130 MIER3 RXRA HSALNG0082823 PDE3B PSMA1 COPB1 piR-57133-067 lnc-PSMA1-1 ENSG00000256206
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PSMA1 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for PSMA1

Top Transcription factor binding sites by QIAGEN in the PSMA1 gene promoter:
  • AREB6
  • C/EBPalpha
  • GR
  • GR-alpha
  • Lmo2
  • p53

Genomic Locations for PSMA1 Gene

Latest Assembly
chr11:14,504,874-14,643,662
(GRCh38/hg38)
Size:
138,789 bases
Orientation:
Minus strand

Previous Assembly
chr11:14,526,422-14,665,208
(GRCh37/hg19 by Entrez Gene)
Size:
138,787 bases
Orientation:
Minus strand

chr11:14,515,329-14,665,181
(GRCh37/hg19 by Ensembl)
Size:
149,853 bases
Orientation:
Minus strand

Genomic View for PSMA1 Gene

Genes around PSMA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSMA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSMA1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PSMA1 Gene

Proteins for PSMA1 Gene

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  • Protein details for PSMA1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P25786-PSA1_HUMAN
    Recommended name:
    Proteasome subunit alpha type-1
    Protein Accession:
    P25786
    Secondary Accessions:
    • A8K400
    • Q53YE8
    • Q9BRV9

    Protein attributes for PSMA1 Gene

    Size:
    263 amino acids
    Molecular mass:
    29556 Da
    Quaternary structure:
    • The 26S proteasome consists of a 20S proteasome core and two 19S regulatory subunits. The 20S proteasome core is a barrel-shaped complex made of 28 subunits that are arranged in four stacked rings. The two outer rings are each formed by seven alpha subunits, and the two inner rings are formed by seven beta subunits. The proteolytic activity is exerted by three beta-subunits PSMB5, PSMB6 and PSMB7. Interacts with NOTCH3. Interacts with ZFAND1 (PubMed:29804830).

    Three dimensional structures from OCA and Proteopedia for PSMA1 Gene

    Alternative splice isoforms for PSMA1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PSMA1 Gene

Protein Expression for PSMA1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Selected DME Specific Peptides for PSMA1 Gene

P25786:
  • KNVSIGIVG
  • THAVLVALKR
  • GVGLLIAGYD
  • EYAMEAV
  • RPYGVGLL
  • KQGSATVG
  • ARTYLERH
  • EFTIYDDDDV
  • HGLRALRET
  • GLTADAR

Post-translational modifications for PSMA1 Gene

  • Glycosylation at Ser110
  • Ubiquitination at Lys30, Lys50, Lys115, Lys189, Lys208, Lys243, and Lys256
  • Modification sites at PhosphoSitePlus

Other Protein References for PSMA1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibodies for research

Domains & Families for PSMA1 Gene

Gene Families for PSMA1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Enzymes
  • Predicted intracellular proteins

Protein Domains for PSMA1 Gene

InterPro:
Blocks:
  • Proteasome subunit, A-type
ProtoNet:

Suggested Antigen Peptide Sequences for PSMA1 Gene

GenScript: Design optimal peptide antigens:
  • Proteasome subunit alpha type (B4DEV8_HUMAN)
  • Proteasome nu chain (PSA1_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P25786

UniProtKB/Swiss-Prot:

PSA1_HUMAN :
  • Belongs to the peptidase T1A family.
Family:
  • Belongs to the peptidase T1A family.
genes like me logo Genes that share domains with PSMA1: view

Function for PSMA1 Gene

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  6. Cell Lines for research

Molecular function for PSMA1 Gene

UniProtKB/Swiss-Prot Function:
Component of the 20S core proteasome complex involved in the proteolytic degradation of most intracellular proteins. This complex plays numerous essential roles within the cell by associating with different regulatory particles. Associated with two 19S regulatory particles, forms the 26S proteasome and thus participates in the ATP-dependent degradation of ubiquitinated proteins. The 26S proteasome plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins that could impair cellular functions, and by removing proteins whose functions are no longer required. Associated with the PA200 or PA28, the 20S proteasome mediates ubiquitin-independent protein degradation. This type of proteolysis is required in several pathways including spermatogenesis (20S-PA200 complex) or generation of a subset of MHC class I-presented antigenic peptides (20S-PA28 complex).
UniProtKB/Swiss-Prot Induction:
Induced in breast cancer tissue (at protein level). Up-regulated in liver tumor tissues.
GENATLAS Biochemistry:
multicatalytic proteinase complex (20S) proteasome (prosome,macropain) component,alpha type 1,subunit Pros30,30kDa

Enzyme Numbers (IUBMB) for PSMA1 Gene

Phenotypes From GWAS Catalog for PSMA1 Gene

Gene Ontology (GO) - Molecular Function for PSMA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001530 lipopolysaccharide binding IEA --
GO:0003723 RNA binding TAS 7681138
GO:0004175 endopeptidase activity IBA 21873635
GO:0005515 protein binding IPI 12376572
genes like me logo Genes that share ontologies with PSMA1: view
genes like me logo Genes that share phenotypes with PSMA1: view

Animal Models for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PSMA1

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PSMA1 Gene

Localization for PSMA1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PSMA1 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PSMA1 gene
Compartment Confidence
cytoskeleton 5
nucleus 5
extracellular 4
cytosol 4
mitochondrion 2
plasma membrane 1
peroxisome 1
endoplasmic reticulum 1
endosome 1
lysosome 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoplasm (4)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for PSMA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000502 proteasome complex TAS,IDA 17323924
GO:0005634 nucleus TAS,IBA 21873635
GO:0005654 nucleoplasm TAS --
GO:0005737 cytoplasm IBA 21873635
GO:0005813 centrosome IDA --
genes like me logo Genes that share ontologies with PSMA1: view

Pathways & Interactions for PSMA1 Gene

PathCards logo

SuperPathways for PSMA1 Gene

SuperPathway Contained pathways
1 CDK-mediated phosphorylation and removal of Cdc6
Activation of APC/C and APC/C-Cdc20 mediated degradation of mitotic proteins
.95
Cdc20-Phospho-APC/C mediated degradation of Cyclin A
.95
Autodegradation of the E3 ubiquitin ligase COP1
.95
Stabilization of p53
.95
Regulation of activated PAK-2p34 by proteasome mediated degradation
.94
Regulation of Apoptosis
.94
CDK-mediated phosphorylation and removal of Cdc6
.94
Ubiquitin-dependent degradation of Cyclin D
.94
Ubiquitin-dependent degradation of Cyclin D1
.94
Orc1 removal from chromatin
.94
Regulation of DNA replication
.94
Switching of origins to a post-replicative state
.94
Cyclin A-Cdk2-associated events at S phase entry
.93
Cyclin E associated events during G1/S transition
.93
APC/C-Cdc20 mediated degradation of Securin
.93
APC/C-Cdh1 mediated degradation of Cdc20 and other APC/C-Cdh1 targeted proteins in late mitosis/early G1
.93
APC/C-mediated degradation of cell cycle proteins
.93
Regulation of APC/C activators between G1/S and early anaphase
.93
Regulation of mitotic cell cycle
.93
DNA Replication
.93
Synthesis of DNA
.93
Vpu mediated degradation of CD4
.93
Autodegradation of Cdh1 by Cdh1-APC/C
.91
SCF-beta-TrCP mediated degradation of Emi1
.91
p53-Independent DNA Damage Response
.91
p53-Independent G1/S DNA damage checkpoint
.91
Ubiquitin Mediated Degradation of Phosphorylated Cdc25A
.91
ABC transporter disorders
.91
Disorders of transmembrane transporters
.91
Defective CFTR causes cystic fibrosis
.90
Assembly of the pre-replicative complex
.90
Hedgehog ligand biogenesis
.90
Hh mutants abrogate ligand secretion
.90
APC/C-Cdc20 mediated degradation of mitotic proteins
.89
APC-Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint
.89
Vif-mediated degradation of APOBEC3G
.89
Degradation of GLI1 by the proteasome
.89
Degradation of GLI2 by the proteasome
.89
GLI3 is processed to GLI3R by the proteasome
.89
FBXL7 down-regulates AURKA during mitotic entry and in early mitosis
.88
Degradation of AXIN
.88
Cellular response to hypoxia
.87
Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha
.87
Regulation of Hypoxia-inducible Factor (HIF) by oxygen
.87
CDT1 association with the CDC6-ORC-origin complex
.87
Hh mutants that dont undergo autocatalytic processing are degraded by ERAD
.87
AUF1 (hnRNP D0) binds and destabilizes mRNA
.86
p53-Dependent G1 DNA Damage Response
.86
p53-Dependent G1/S DNA damage checkpoint
.86
SCF(Skp2)-mediated degradation of p27/p21
.86
Removal of licensing factors from origins
.86
NIK-->noncanonical NF-kB signaling
.85
Dectin-1 mediated noncanonical NF-kB signaling
.84
G1/S DNA Damage Checkpoints
.84
Degradation of DVL
.83
Cross-presentation of soluble exogenous antigens (endosomes)
.82
The role of GTSE1 in G2/M progression after G2 checkpoint
.81
Regulation of ornithine decarboxylase (ODC)
.81
DNA Replication Pre-Initiation
.80
M/G1 Transition
.80
Proteasome
.80
S Phase
.78
Activation of NF-kappaB in B cells
.77
Asymmetric localization of PCP proteins
.74
FCERI mediated NF-kB activation
.72
Regulation of RAS by GAPs
.70
PCP/CE pathway
.70
Beta-catenin independent WNT signaling
.64
Degradation of beta-catenin by the destruction complex
.64
Regulation of mRNA stability by proteins that bind AU-rich elements
.63
Metabolism of polyamines
.60
ABC-family proteins mediated transport
.58
TNFR2 non-canonical NF-kB pathway
.58
MAPK6/MAPK4 signaling
.57
Proteasome Degradation
.56
UCH proteinases
.47
Canonical Wnt Pathway
.31
Apoptosis
.31
Programmed Cell Death
.31
2 RET signaling
Frs2-mediated activation
.95
GRB2 events in EGFR signaling
.95
MAPK1/MAPK3 signaling
.95
Prolonged ERK activation events
.95
RAF/MAP kinase cascade
.95
SHC1 events in EGFR signaling
.95
Signaling by Leptin
.95
SOS-mediated signalling
.95
VEGFR2 mediated cell proliferation
.95
ARMS-mediated activation
.95
Signalling to ERKs
.95
Signalling to p38 via RIT and RIN
.95
Signalling to RAS
.95
Interleukin receptor SHC signaling
.95
Interleukin-3, 5 and GM-CSF signaling
.94
Interleukin-2 signaling
.94
Downstream signal transduction
.94
Signaling by PDGF
.94
DAP12 signaling
.92
RET signaling
.92
Insulin receptor signalling cascade
.92
Signaling by Insulin receptor
.92
IRS-mediated signalling
.91
Signaling by EGFR
.90
FCERI mediated MAPK activation
.90
IGF1R signaling cascade
.90
IRS-related events triggered by IGF1R
.90
Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R)
.90
DAP12 interactions
.89
NCAM signaling for neurite out-growth
.89
NGF signalling via TRKA from the plasma membrane
.87
MAPK family signaling cascades
.87
Signaling by SCF-KIT
.85
Signalling by NGF
.81
Fc epsilon receptor (FCERI) signaling
.79
VEGFA-VEGFR2 Pathway
.78
Signaling by VEGF
.76
Gastrin-CREB signalling pathway via PKC and MAPK
.55
3 Chks in Checkpoint Regulation
Chks in Checkpoint Regulation
.59
G2-M Phase Transition
.59
Estrogen-mediated S-Phase Entry
.55
SREBP Proteolysis
.43
DNA Repair Mechanisms
.32
Parkinson's Disease Pathway
.31
4 HIV Life Cycle
HIV Infection
.64
Infectious disease
.61
Host Interactions of HIV factors
.57
Disease
.45
Diseases of signal transduction
.43
5 Pathways of neurodegeneration - multiple diseases
Alzheimer disease
.65
Pathways of neurodegeneration - multiple diseases
.65
Amyotrophic lateral sclerosis
.54
Huntington disease
.50
genes like me logo Genes that share pathways with PSMA1: view

Pathways by source for PSMA1 Gene

1 Sino Biological pathway for PSMA1 Gene
1 BioSystems pathway for PSMA1 Gene
4 GeneGo (Thomson Reuters) pathways for PSMA1 Gene
  • Immune response Antigen presentation by MHC class I
  • Regulation of degradation of deltaF508 CFTR in CF
  • Regulation of degradation of wt-CFTR
  • Transcription Ligand-Dependent Transcription of Retinoid-Target genes
17 Qiagen pathways for PSMA1 Gene
  • CDK5 Pathway
  • Chks in Checkpoint Regulation
  • DNA Repair Mechanisms
  • Estrogen-mediated S-Phase Entry
  • G2-M Phase Transition

Gene Ontology (GO) - Biological Process for PSMA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000165 MAPK cascade TAS --
GO:0000209 protein polyubiquitination TAS --
GO:0002223 stimulatory C-type lectin receptor signaling pathway TAS --
GO:0002376 immune system process IEA --
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent TAS --
genes like me logo Genes that share ontologies with PSMA1: view

No data available for SIGNOR curated interactions for PSMA1 Gene

Drugs & Compounds for PSMA1 Gene

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(17) Drugs for PSMA1 Gene - From: DrugBank, ApexBio, and DGIdb

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Bortezomib Approved, Investigational Pharma inhibitor, other Proteosome and NF-kappaB inhibitor, Other, Proteasome inhibitors 926
carfilzomib Approved, Investigational Pharma other, Inhibitor Other, 20S Proteasome Inhibitor 0
(3AR,6R,6AS)-6-((S)-((S)-CYCLOHEX-2-ENYL)(HYDROXY)METHYL)-6A-METHYL-4-OXO-HEXAHYDRO-2H-FURO[3,2-C]PYRROLE-6-CARBALDEHYDE Experimental Pharma Target 0
AM 114 Pharma 20S proteasome inhibitor 0
Bortezomib (PS-341) Pharma Proteasome Inhibitor 0

(14) ApexBio Compounds for PSMA1 Gene

Compound Action Cas Number
AM 114 20S proteasome inhibitor 856849-35-9
Bortezomib (PS-341) Proteasome Inhibitor 179324-69-7
Carfilzomib (PR-171) Proteasome inhibitor,epoxomicin analog 868540-17-4
Celastrol Antioxidant, anti-inflammatory and immunosuppressive agent 34157-83-0
CEP-18770 Proteasome inhibitor 847499-27-8
Dihydroeponemycin Proteasome inhibitor,antitumor reagent,eponemycin ddrivative 126463-64-7
Epoxomicin Proteasome inhibitor 134381-21-8
MG-132 Proteasome inhibitor, Cell permeable, reversible 133407-82-6
MLN2238 β5 site of the 20S proteasome inhibitor 1072833-77-2
MLN9708 Proteasome inhibitor 1201902-80-8
ONX-0914 (PR-957) Immunoproteasome inhibitor,potent and selective 960374-59-8
Oprozomib (ONX-0912) Proteasome inhibitor 935888-69-0
PI-1840 Chymotrypsin-like (CT-L) inhibitor 1401223-22-0
PSI Proteasome inhibitor 158442-41-2
genes like me logo Genes that share compounds with PSMA1: view

Drug products for research

Transcripts for PSMA1 Gene

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mRNA/cDNA for PSMA1 Gene

3 REFSEQ mRNAs :
17 NCBI additional mRNA sequence :
14 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for PSMA1

Alternative Splicing Database (ASD) splice patterns (SP) for PSMA1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b · 12c
SP1: - - - - -
SP2: - - - -
SP3: - - - -
SP4:
SP5: -
SP6:
SP7: - -
SP8: -
SP9: -

Relevant External Links for PSMA1 Gene

GeneLoc Exon Structure for
PSMA1

Expression for PSMA1 Gene

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  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PSMA1 Gene

mRNA expression in normal human tissues for PSMA1 Gene
mRNA expression by BioGPS for PSMA1 GenemRNA expression by GTEx for PSMA1 Gene

Protein differential expression in normal tissues from HIPED for PSMA1 Gene

This gene is overexpressed in Liver, secretome (7.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for PSMA1 Gene



Protein tissue co-expression partners for PSMA1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PSMA1

SOURCE GeneReport for Unigene cluster for PSMA1 Gene:

Hs.102798

Evidence on tissue expression from TISSUES for PSMA1 Gene

  • Nervous system(4.9)
  • Liver(4.7)
  • Bone marrow(4.5)
  • Intestine(3)
  • Skin(3)
  • Lymph node(2.7)
  • Muscle(2.7)
  • Lung(2.7)
  • Pancreas(2.6)
  • Kidney(2.6)
  • Heart(2.5)
  • Spleen(2.4)
  • Thyroid gland(2.4)
  • Gall bladder(2.4)
  • Adrenal gland(2.4)
  • Blood(2.2)
genes like me logo Genes that share expression patterns with PSMA1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for PSMA1 Gene

Orthologs for PSMA1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for PSMA1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia PSMA1 30 31
  • 99.62 (n)
 OneToOne
Dog
(Canis familiaris)
 Mammalia -- 31
  • 98 (a)
 ManyToMany
-- 31
  • 97 (a)
 ManyToMany
-- 31
  • 96 (a)
 ManyToMany
-- 31
  • 95 (a)
 ManyToMany
PSMA1 30
  • 94.55 (n)
-- 31
  • 90 (a)
 ManyToMany
Oppossum
(Monodelphis domestica)
 Mammalia -- 31
  • 98 (a)
 OneToMany
Platypus
(Ornithorhynchus anatinus)
 Mammalia -- 31
  • 96 (a)
 OneToMany
Cow
(Bos Taurus)
 Mammalia PSMA1 30 31
  • 94.17 (n)
 OneToMany
Mouse
(Mus musculus)
 Mammalia Psma1 30 17 31
  • 92.02 (n)
 OneToMany
Rat
(Rattus norvegicus)
 Mammalia Psma1 30
  • 90.37 (n)
Chicken
(Gallus gallus)
 Aves PSMA1 30 31
  • 83.2 (n)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia -- 31
  • 92 (a)
 OneToMany
Tropical Clawed Frog
(Silurana tropicalis)
 Amphibia Str.5957 30
Zebrafish
(Danio rerio)
 Actinopterygii psma1 30 31
  • 74.46 (n)
 OneToMany
wufc17c09 30
Rainbow Trout
(Oncorhynchus mykiss)
 Actinopterygii Omy.8498 30
Fruit Fly
(Drosophila melanogaster)
 Insecta Prosalpha6T 30 31 32
  • 54.35 (n)
 ManyToMany
Pros35 31 32
  • 51 (a)
 ManyToMany
Worm
(Caenorhabditis elegans)
 Secernentea pas-6 30 31
  • 55.34 (n)
 OneToMany
Baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes PRE5 30 31
  • 56.32 (n)
 OneToMany
K. Lactis Yeast
(Kluyveromyces lactis)
 Saccharomycetes KLLA0A10153g 30
  • 56.18 (n)
A. gosspyii yeast
(Eremothecium gossypii)
 Saccharomycetes AGOS_AGL336W 30
  • 53.02 (n)
Thale Cress
(Arabidopsis thaliana)
 eudicotyledons PAF2 30
  • 54.5 (n)
Alicante grape
(Vitis vinifera)
 eudicotyledons Vvi.6955 30
Rice
(Oryza sativa)
 Liliopsida Os02g0133800 30
  • 54.38 (n)
Barley
(Hordeum vulgare)
 Liliopsida Hv.2240 30
Wheat
(Triticum aestivum)
 Liliopsida Ta.18932 30
Sea Squirt
(Ciona savignyi)
 Ascidiacea CSA.5765 31
  • 66 (a)
 OneToMany
Fission Yeast
(Schizosaccharomyces pombe)
 Schizosaccharomycetes SPAC6G10.04c 30
  • 57.14 (n)
Bread mold
(Neurospora crassa)
 Ascomycetes NCU06712 30
  • 51.52 (n)
Sea Vase
(Ciona intestinalis)
 Ascidiacea Cin.4798 30
Species where no ortholog for PSMA1 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for PSMA1 Gene

ENSEMBL:
Gene Tree for PSMA1 (if available)
TreeFam:
Gene Tree for PSMA1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for PSMA1: view image

Paralogs for PSMA1 Gene

Paralogs for PSMA1 Gene

(7) SIMAP similar genes for PSMA1 Gene using alignment to 4 proteins:

  • PSA1_HUMAN
  • B4DEV8_HUMAN
  • F5GX11_HUMAN
  • F5H112_HUMAN

Pseudogenes.org Pseudogenes for PSMA1 Gene

genes like me logo Genes that share paralogs with PSMA1: view

Variants for PSMA1 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for PSMA1 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
rs552770453 Likely Benign: not provided 14,519,042(-) CTAAAAG/C
NM_148976.2(PSMA1):c.22-7_22-2del 		SPLICE_ACCEPTOR
rs61732660 Benign: not provided 14,507,704(-) C/T
NM_148976.2(PSMA1):c.705G>A (p.Val235=) 		SYNONYMOUS
rs17850016 - p.Gly37Val

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PSMA1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for PSMA1 Gene

Variant ID Type Subtype PubMed ID
esv3305305 CNV mobile element insertion 20981092
esv3324169 CNV insertion 20981092
esv3578250 CNV gain 25503493
esv3625423 CNV loss 21293372
esv3625424 CNV loss 21293372
nsv1048243 CNV gain 25217958
nsv517985 CNV loss 19592680
nsv518508 CNV loss 19592680
nsv7685 CNV insertion 18451855
nsv951312 CNV deletion 24416366

Variation tolerance for PSMA1 Gene

Residual Variation Intolerance Score: 36.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.79; 16.71% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PSMA1 Gene

Human Gene Mutation Database (HGMD)
PSMA1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSMA1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PSMA1 Gene

Disorders for PSMA1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for PSMA1 Gene - From: COP and GCD

Disorder Aliases PubMed IDs
hemangioma of spleen
  • splenic hemangioma
cystic fibrosis
  • cf
- elite association - COSMIC cancer census association via MalaCards
Search PSMA1 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for PSMA1

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with PSMA1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PSMA1 Gene

Publications for PSMA1 Gene

  1. Two mRNAs exist for the Hs PROS-30 gene encoding a component of human prosomes. (PMID: 1398136) Silva Pereira I … Scherrer K (Gene 1992) 2 3 4
  2. Molecular cloning and sequence analysis of cDNAs for five major subunits of human proteasomes (multi-catalytic proteinase complexes). (PMID: 2025653) Tamura T … Ichihara A (Biochimica et biophysica acta 1991) 2 3 4
  3. ZFAND1 Recruits p97 and the 26S Proteasome to Promote the Clearance of Arsenite-Induced Stress Granules. (PMID: 29804830) Turakhiya A … Buchberger A (Molecular cell 2018) 3 4
  4. An atomic structure of the human 26S proteasome. (PMID: 27428775) Huang X … Shi Y (Nature structural & molecular biology 2016) 3 4
  5. Crystal structure of the human 20S proteasome in complex with carfilzomib. (PMID: 25599644) Harshbarger W … Sacchettini J (Structure (London, England : 1993) 2015) 3 4

ExternalLinks

View latest publications for PSMA1 gene in Mastermind

Products for PSMA1 Gene