Aliases for PSLNR Gene

Subcategory (RNA class) for PSLNR Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for PSLNR Gene

  • Prostate Enriched LncRNA 2 3 5
  • Prostate-Specific LncRNA 2 3
  • LA16c-83F12.6 2 3
  • PSLNR 2 5
  • NONHSAG014341.2 91
  • NONHSAG033145.2 91
  • NONHSAG014327.2 91
  • HSALNG0099743 164
  • HSALNG0133783 164
  • Lnc-POTEH-3 165
  • LINC01297 2

External Ids for PSLNR Gene

Previous GeneCards Identifiers for PSLNR Gene

  • GC22U901558

Summaries for PSLNR Gene

GeneCards Summary for PSLNR Gene

PSLNR (Prostate Enriched LncRNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PSLNR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PSLNR Gene

Genomics for PSLNR Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PSLNR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J015784 Promoter 0.6 Ensembl 0.3 +47.4 47376 2.6 ZBTB12 RNF2 MLLT1 EMSY DUXAP8 lnc-POTEG-14-002 piR-47211-443 piR-57600-003 PSLNR POTEH CCT8L2
GH22J015750 Promoter 0.3 Ensembl 0.4 +12.7 12676 0.4 GRAMD4P2 lnc-CCT8L2-27 KY994054-039 PSLNR POTEH CCT8L2
GH22J015772 Enhancer 0.3 Ensembl 0.3 +34.8 34775 0.6 FOS lnc-POTEH-5 piR-52457-007 piR-48287-003 LOC107987324 PSLNR POTEH CCT8L2
GH22J015817 Enhancer 0.2 Ensembl 0.2 +79.3 79276 0.4 lnc-CCT8L2-28 piR-54859-003 BMS1P22 lnc-POTEG-14-002 DUXAP8 PSLNR POTEH CCT8L2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PSLNR on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PSLNR Gene

Genomic Locations for PSLNR Gene
chr22:15,738,325-15,827,703
(GRCh38/hg38)
Size:
89,379 bases
Orientation:
Plus strand
chr22:16,199,666-16,231,333
(GRCh37/hg19)
Size:
31,668 bases
Orientation:
Minus strand

Genomic View for PSLNR Gene

Genes around PSLNR on UCSC Golden Path with GeneCards custom track
PSLNR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
PSLNR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSLNR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSLNR Gene

Proteins for PSLNR Gene

No data available for DME Specific Peptides for PSLNR Gene

Domains & Families for PSLNR Gene

Gene Families for PSLNR Gene

genes like me logo Genes that share domains with PSLNR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PSLNR Gene

Function for PSLNR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PSLNR Gene

Localization for PSLNR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PSLNR Gene

Pathways & Interactions for PSLNR Gene

PathCards logo

SuperPathways for PSLNR Gene

No Data Available

Gene Ontology (GO) - Biological Process for PSLNR Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PSLNR Gene

Drugs & Compounds for PSLNR Gene

No Compound Related Data Available

Transcripts for PSLNR Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PSLNR Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000429730_9606 lncRNA 519 4

Ensembl: ENST00000438574 (view in UCSC) ,

LncBook: HSALNT0274896,

LNCipedia: lnc-POTEH-3:2,

NONCODE: NONHSAT083094.2,

URS000050471D_9606 lncRNA 624 3

Ensembl: ENST00000453395 (view in UCSC) ,

LNCipedia: lnc-POTEH-3:1,

NONCODE: NONHSAT083095.2,

URS000194B0D2_9606 lncRNA 3747 2

HGNC: 50443,

RefSeq: NR_164166,

URS000194B0E6_9606 lncRNA 1155 2

HGNC: 54405,

RefSeq: NR_132385,

URS000194B0EC_9606 lncRNA 5295 1

RefSeq: NR_164309,

PSLNR in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PSLNR Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PSLNR Gene

No ASD Table

Relevant External Links for PSLNR Gene

GeneLoc Exon Structure for
PSLNR

Expression for PSLNR Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PSLNR Gene

Orthologs for PSLNR Gene

Evolution for PSLNR Gene

ENSEMBL:
Gene Tree for PSLNR (if available)
TreeFam:
Gene Tree for PSLNR (if available)

No data available for Orthologs for PSLNR Gene

Paralogs for PSLNR Gene

No data available for Paralogs for PSLNR Gene

Variants for PSLNR Gene

Additional dbSNP identifiers (rs#s) for PSLNR Gene

Additional Variant Information for PSLNR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSLNR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PSLNR Gene

Disorders for PSLNR Gene

Additional Disease Information for PSLNR

No disorders were found for PSLNR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PSLNR Gene

Publications for PSLNR Gene

  1. A novel androgen-reduced prostate-specific lncRNA, PSLNR, inhibits prostate-cancer progression in part by regulating the p53-dependent pathway. (PMID: 31269242) Wang D … Xu Y (The Prostate 2019) 2 3

No data available for Mastermind for PSLNR Gene

Products for PSLNR Gene

Sources for PSLNR Gene