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Aliases for PSG10P Gene

Aliases for PSG10P Gene

  • Pregnancy Specific Beta-1-Glycoprotein 10, Pseudogene 2 3 5
  • Pregnancy Specific Beta-1-Glycoprotein 120 2 3
  • Pregnancy Specific Beta-1-Glycoprotein 12 2 3
  • Pregnancy Specific Beta-1-Glycoprotein 1 Pseudogene 3
  • Pregnancy Specific Beta-1-Glycoprotein 10 2
  • Pregnancy-Specific Beta-1 Glycoprotein 3
  • PSG10 3
  • PSG12 3

External Ids for PSG10P Gene

Previous HGNC Symbols for PSG10P Gene

  • PSG12
  • PSG10

Previous GeneCards Identifiers for PSG10P Gene

  • GC19M043342

Summaries for PSG10P Gene

Entrez Gene Summary for PSG10P Gene

  • The human pregnancy-specific glycoproteins (PSGs) are a group of molecules that are mainly produced by the placental syncytiotrophoblasts during pregnancy. PSGs comprise a subgroup of the carcinoembryonic antigen (CEA) family, which belongs to the immunoglobulin superfamily. For additional general information about the PSG gene family, see PSG1 (MIM 176390).[supplied by OMIM, Oct 2009]

GeneCards Summary for PSG10P Gene

PSG10P (Pregnancy Specific Beta-1-Glycoprotein 10, Pseudogene) is a Pseudogene.

Gene Wiki entry for PSG10P Gene

Additional gene information for PSG10P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSG10P Gene

Genomics for PSG10P Gene

GeneHancer (GH) Regulatory Elements for PSG10P Gene

Promoters and enhancers for PSG10P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J042849 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.7 +3.8 3813 4.3 ZBTB21 JUN MAX SIN3A FEZF1 FOSL1 ZNF335 ZNF791 GATA3 ZNF366 ZNF526 PSG4 ENSG00000231412 MEGF8 PSG10P PSG8 GC19P042828
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PSG10P on UCSC Golden Path with GeneCards custom track

Genomic Locations for PSG10P Gene

Genomic Locations for PSG10P Gene
chr19:42,836,997-42,855,718
(GRCh38/hg38)
Size:
18,722 bases
Orientation:
Minus strand
chr19:43,341,149-43,359,870
(GRCh37/hg19)
Size:
18,722 bases
Orientation:
Minus strand

Genomic View for PSG10P Gene

Genes around PSG10P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PSG10P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PSG10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSG10P Gene

Proteins for PSG10P Gene

Post-translational modifications for PSG10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for PSG10P Gene

Domains & Families for PSG10P Gene

Gene Families for PSG10P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PSG10P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PSG10P Gene

Function for PSG10P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PSG10P Gene

Localization for PSG10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PSG10P Gene

Pathways & Interactions for PSG10P Gene

SuperPathways for PSG10P Gene

No Data Available

Interacting Proteins for PSG10P Gene

Gene Ontology (GO) - Biological Process for PSG10P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PSG10P Gene

Drugs & Compounds for PSG10P Gene

No Compound Related Data Available

Transcripts for PSG10P Gene

mRNA/cDNA for PSG10P Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PSG10P Gene

Pregnancy specific beta-1-glycoprotein 10, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PSG10P Gene

No ASD Table

Relevant External Links for PSG10P Gene

GeneLoc Exon Structure for
PSG10P
ECgene alternative splicing isoforms for
PSG10P

Expression for PSG10P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PSG10P Gene

mRNA differential expression in normal tissues according to GTEx for PSG10P Gene

This gene is overexpressed in Testis (x6.8).

NURSA nuclear receptor signaling pathways regulating expression of PSG10P Gene:

PSG10P

SOURCE GeneReport for Unigene cluster for PSG10P Gene:

Hs.655399
genes like me logo Genes that share expression patterns with PSG10P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PSG10P Gene

Orthologs for PSG10P Gene

Evolution for PSG10P Gene

ENSEMBL:
Gene Tree for PSG10P (if available)
TreeFam:
Gene Tree for PSG10P (if available)

No data available for Orthologs for PSG10P Gene

Paralogs for PSG10P Gene

No data available for Paralogs for PSG10P Gene

Variants for PSG10P Gene

Sequence variations from dbSNP and Humsavar for PSG10P Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000051771 -- 42,838,210(-) A/C intron_variant
rs1000103817 -- 42,837,967(-) G/C intron_variant
rs1000284296 -- 42,842,049(-) A/G intron_variant
rs1000301122 -- 42,852,368(-) T/A intron_variant
rs1000322318 -- 42,845,347(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PSG10P Gene

Variant ID Type Subtype PubMed ID
dgv140e55 CNV gain 17911159
dgv141e55 CNV loss 17911159
dgv142e55 CNV loss 17911159
dgv143n111 CNV deletion 26073780
dgv144n111 CNV deletion 26073780
dgv15e196 CNV deletion 17116639
dgv223e215 CNV deletion 23714750
dgv3551n100 CNV gain 25217958
dgv3552n100 CNV gain 25217958
dgv3554n100 CNV gain 25217958
dgv3555n100 CNV gain 25217958
dgv3556n100 CNV gain 25217958
dgv3557n100 CNV gain 25217958
dgv3558n100 CNV loss 25217958
dgv3559n100 CNV gain 25217958
dgv3560n100 CNV gain 25217958
dgv3561n100 CNV gain+loss 25217958
dgv3562n100 CNV gain 25217958
dgv3563n100 CNV gain 25217958
dgv3564n100 CNV loss 25217958
dgv3565n100 CNV gain+loss 25217958
dgv3566n100 CNV gain 25217958
dgv3567n100 CNV gain+loss 25217958
dgv3568n100 CNV loss 25217958
dgv3569n100 CNV gain 25217958
dgv3570n100 CNV gain+loss 25217958
dgv3571n100 CNV loss 25217958
dgv3572n100 CNV gain+loss 25217958
dgv3573n100 CNV loss 25217958
dgv3574n100 CNV gain 25217958
dgv409n27 CNV loss 19166990
dgv410n27 CNV gain 19166990
dgv411n27 CNV loss 19166990
dgv523e201 CNV deletion 23290073
dgv589n67 CNV loss 20364138
dgv6461n54 CNV gain 21841781
dgv6462n54 CNV gain 21841781
dgv6463n54 CNV gain 21841781
dgv6464n54 CNV loss 21841781
dgv6465n54 CNV loss 21841781
dgv6466n54 CNV gain 21841781
dgv6467n54 CNV loss 21841781
dgv6468n54 CNV loss 21841781
dgv6469n54 CNV gain 21841781
dgv6470n54 CNV gain 21841781
dgv6471n54 CNV loss 21841781
dgv6472n54 CNV loss 21841781
dgv73e203 CNV gain+loss 21179565
esv22277 CNV gain+loss 19812545
esv2421673 OTHER complex 20811451
esv2422471 CNV deletion 17116639
esv2663048 CNV deletion 23128226
esv2668472 CNV deletion 23128226
esv2718595 CNV deletion 23290073
esv2718597 CNV deletion 23290073
esv2718598 CNV deletion 23290073
esv2758763 CNV gain+loss 17122850
esv33217 CNV loss 17666407
esv3584738 CNV loss 24956385
esv3644409 CNV loss 21293372
esv3644410 CNV loss 21293372
esv3644411 CNV loss 21293372
esv3644413 CNV loss 21293372
esv3644414 CNV gain 21293372
esv3644417 CNV loss 21293372
esv3644418 CNV loss 21293372
esv3893211 CNV gain+loss 25118596
esv3893214 CNV gain+loss 25118596
esv3893216 CNV gain+loss 25118596
nsv1056270 CNV loss 25217958
nsv1057657 CNV gain 25217958
nsv1060654 CNV gain 25217958
nsv1064698 CNV gain 25217958
nsv1065245 CNV gain+loss 25217958
nsv1066044 CNV gain 25217958
nsv1121981 CNV deletion 24896259
nsv1142088 CNV deletion 24896259
nsv1160630 OTHER complex 26073780
nsv1160633 CNV duplication 26073780
nsv1160634 CNV duplication 26073780
nsv2497 CNV deletion 18451855
nsv428364 CNV gain+loss 18775914
nsv442766 CNV gain+loss 18776908
nsv470143 CNV gain 18288195
nsv470145 CNV loss 18288195
nsv516973 CNV gain+loss 19592680
nsv579649 CNV loss 21841781
nsv579653 CNV gain 21841781
nsv579687 CNV gain+loss 21841781
nsv817841 CNV gain 17921354
nsv817842 CNV gain+loss 17921354
nsv817843 CNV gain 17921354
nsv828554 CNV gain 20364138
nsv833835 CNV gain 17160897
nsv953586 CNV deletion 24416366
nsv963056 CNV duplication 23825009
nsv9730 CNV gain+loss 18304495

Additional Variant Information for PSG10P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PSG10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PSG10P Gene

Disorders for PSG10P Gene

Additional Disease Information for PSG10P

No disorders were found for PSG10P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PSG10P Gene

Publications for PSG10P Gene

  1. The pregnancy-specific glycoprotein family of the immunoglobulin superfamily: identification of new members and estimation of family size. (PMID: 1572651) Khan WN … Hammarström S (Genomics 1992) 2 3 58
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 3 58
  3. Characterization of two allelic variants of a human pregnancy-specific glycoprotein gene. (PMID: 8349632) Lei KJ … Chou JY (The Journal of biological chemistry 1993) 3 58
  4. The human pregnancy-specific glycoprotein genes are tightly linked on the long arm of chromosome 19 and are coordinately expressed. (PMID: 1690992) Thompson J … Zaninetta D (Biochemical and biophysical research communications 1990) 3 58
  5. Characterization of two new members of the pregnancy-specific beta 1-glycoprotein family from the myeloid cell line KG-1 and suggestion of two distinct classes of transcription unit. (PMID: 2271648) Barnett TR … Elting JJ (Biochemistry 1990) 3 58

Products for PSG10P Gene

Sources for PSG10P Gene

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