Aliases for PRSS40A Gene

Aliases for PRSS40A Gene

  • Serine Protease 40A (Pseudogene) 2 3 5
  • TISP43 2 3
  • Serine Protease 40A 2
  • PRSS40A 5

External Ids for PRSS40A Gene

Summaries for PRSS40A Gene

GeneCards Summary for PRSS40A Gene

PRSS40A (Serine Protease 40A (Pseudogene)) is a Pseudogene.

Additional gene information for PRSS40A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRSS40A Gene

Genomics for PRSS40A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PRSS40A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J130570 Promoter 0.3 EPDnew 250.7 0.0 -44 0.1 PRSS40A piR-42839-002 piR-50443-219 CFC1 CFC1B
GH02J130573 Promoter 0.3 EPDnew 0.7 +2.5 2461 0.1 NONHSAG029269.2 piR-42839-002 PRSS40A CFC1 CFC1B
GH02J130568 Enhancer 0.2 Ensembl 0.7 -2.1 -2128 0.2 PRSS40A piR-50443-219 CFC1 CFC1B
GH02J130576 Enhancer 0.2 Ensembl 0.4 +5.7 5672 1.8 HSALNG0018827-002 NONHSAG029269.2 PRSS40A CFC1 CFC1B
GH02J130580 Enhancer 0.2 dbSUPER 0.4 +10.3 10308 0.7 HSALNG0018827-002 piR-46320-002 NONHSAG029269.2 PRSS40A CFC1 CFC1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRSS40A on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PRSS40A Gene

Latest Assembly
chr2:130,570,829-130,584,161
(GRCh38/hg38)
Size:
13,333 bases
Orientation:
Plus strand

Previous Assembly
chr2:131,328,419-131,341,734
(GRCh37/hg19 by Entrez Gene)
Size:
13,316 bases
Orientation:
Plus strand

chr2:131,328,402-131,341,734
(GRCh37/hg19 by Ensembl)
Size:
13,333 bases
Orientation:
Plus strand

Genomic View for PRSS40A Gene

Genes around PRSS40A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PRSS40A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRSS40A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRSS40A Gene

Proteins for PRSS40A Gene

Post-translational modifications for PRSS40A Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRSS40A Gene

Domains & Families for PRSS40A Gene

Gene Families for PRSS40A Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
genes like me logo Genes that share domains with PRSS40A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRSS40A Gene

Function for PRSS40A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRSS40A Gene

Localization for PRSS40A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PRSS40A gene
Compartment Confidence
plasma membrane 1
mitochondrion 1
peroxisome 1
nucleus 1
extracellular 0
cytosol 0

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRSS40A Gene

Pathways & Interactions for PRSS40A Gene

PathCards logo

SuperPathways for PRSS40A Gene

No Data Available

Gene Ontology (GO) - Biological Process for PRSS40A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PRSS40A Gene

Drugs & Compounds for PRSS40A Gene

No Compound Related Data Available

Transcripts for PRSS40A Gene

mRNA/cDNA for PRSS40A Gene

3 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for PRSS40A Gene

No ASD Table

Relevant External Links for PRSS40A Gene

GeneLoc Exon Structure for
PRSS40A

Expression for PRSS40A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PRSS40A

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRSS40A Gene

Orthologs for PRSS40A Gene

Evolution for PRSS40A Gene

ENSEMBL:
Gene Tree for PRSS40A (if available)
TreeFam:
Gene Tree for PRSS40A (if available)
Alliance of Genome Resources:
Additional Orthologs for PRSS40A

No data available for Orthologs for PRSS40A Gene

Paralogs for PRSS40A Gene

Pseudogenes.org Pseudogenes for PRSS40A Gene

genes like me logo Genes that share paralogs with PRSS40A: view

No data available for Paralogs for PRSS40A Gene

Variants for PRSS40A Gene

Structural Variations from Database of Genomic Variants (DGV) for PRSS40A Gene

Variant ID Type Subtype PubMed ID
dgv2032n106 OTHER inversion 24896259
dgv2035n106 CNV duplication 24896259
dgv4074n100 CNV gain 25217958
esv2759092 CNV gain+loss 17122850
esv3584076 CNV loss 25503493
esv3592455 CNV loss 21293372
nsv1005664 CNV loss 25217958
nsv1072452 CNV deletion 25765185
nsv1072453 CNV deletion 25765185
nsv1118879 CNV deletion 24896259
nsv1147463 OTHER inversion 26484159
nsv1148026 CNV duplication 26484159
nsv428403 CNV loss 18775914
nsv583134 CNV loss 21841781
nsv7327 OTHER inversion 18451855
nsv953164 CNV deletion 24416366
nsv961509 CNV duplication 23825009

Additional Variant Information for PRSS40A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRSS40A
Leiden Open Variation Database (LOVD)
PRSS40A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for PRSS40A Gene

Disorders for PRSS40A Gene

Additional Disease Information for PRSS40A

No disorders were found for PRSS40A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRSS40A Gene

Publications for PRSS40A Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for PRSS40A Gene

Sources for PRSS40A Gene