Aliases for PRRX2-AS1 Gene

Data sources for PRRX2-AS1 Gene:

RNA type for PRRX2-AS1 Gene

lncRNA

Aliases for PRRX2-AS1 Gene

External Ids for PRRX2-AS1 Gene

Summaries for PRRX2-AS1 Gene

GeneCards Summary for PRRX2-AS1 Gene

PRRX2-AS1 (PRRX2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PRRX2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRRX2-AS1 Gene

Genomics for PRRX2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for PRRX2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRRX2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for PRRX2-AS1 Gene

Latest Assembly
chr9:129,712,065-129,725,179
(GRCh38/hg38)
Size:
13,115 bases
Orientation:
Minus strand

Previous Assembly
chr9:132,475,173-132,480,985
(GRCh37/hg19 by Entrez Gene)
Size:
5,813 bases
Orientation:
Minus strand

chr9:132,475,175-132,480,914
(GRCh37/hg19 by Ensembl)
Size:
5,740 bases
Orientation:
Minus strand

Genomic View for PRRX2-AS1 Gene

Genes around PRRX2-AS1 on UCSC Golden Path with GeneCards custom track
PRRX2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
PRRX2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRRX2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRRX2-AS1 Gene

Proteins for PRRX2-AS1 Gene

Post-translational modifications for PRRX2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRRX2-AS1 Gene

Domains & Families for PRRX2-AS1 Gene

Gene Families for PRRX2-AS1 Gene

genes like me logo Genes that share domains with PRRX2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRRX2-AS1 Gene

Function for PRRX2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRRX2-AS1 Gene

Localization for PRRX2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRRX2-AS1 Gene

Pathways & Interactions for PRRX2-AS1 Gene

PathCards logo

SuperPathways for PRRX2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PRRX2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for PRRX2-AS1 Gene

Drugs & Compounds for PRRX2-AS1 Gene

No Compound Related Data Available

Transcripts for PRRX2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for PRRX2-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008E39F9_9606 lncRNA 502 2

RefSeq: NR_132102,

LNCipedia: PRRX2-AS1:3,

URS000008BF97_9606 lncRNA 431 2

Ensembl: ENST00000440413 (view in UCSC) ,

LNCipedia: PRRX2-AS1:2,

URS00008B6749_9606 lncRNA 445 2

LNCipedia: PRRX2-AS1:1,

NONCODE: NONHSAT135114.2,

URS0001BF2F16_9606 lncRNA 1901 1

LncBook: HSALNT0156050,

URS0001BD51D7_9606 lncRNA 1554 1

LncBook: HSALNT0156049,

PRRX2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for PRRX2-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for PRRX2-AS1 Gene

No ASD Table

Relevant External Links for PRRX2-AS1 Gene

GeneLoc Exon Structure for
PRRX2-AS1

Expression for PRRX2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PRRX2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for PRRX2-AS1

genes like me logo Genes that share expression patterns with PRRX2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRRX2-AS1 Gene

Orthologs for PRRX2-AS1 Gene

Evolution for PRRX2-AS1 Gene

ENSEMBL:
Gene Tree for PRRX2-AS1 (if available)
TreeFam:
Gene Tree for PRRX2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for PRRX2-AS1

No data available for Orthologs for PRRX2-AS1 Gene

Paralogs for PRRX2-AS1 Gene

No data available for Paralogs for PRRX2-AS1 Gene

Variants for PRRX2-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for PRRX2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for PRRX2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRRX2-AS1
Leiden Open Variation Database (LOVD)
PRRX2-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for PRRX2-AS1 Gene

Disorders for PRRX2-AS1 Gene

Additional Disease Information for PRRX2-AS1

No disorders were found for PRRX2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRRX2-AS1 Gene

Publications for PRRX2-AS1 Gene

No publications were found for PRRX2-AS1 Gene.

Products for PRRX2-AS1 Gene

Sources for PRRX2-AS1 Gene