Aliases for PRR7-AS1 Gene

Subcategory (RNA class) for PRR7-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for PRR7-AS1 Gene

  • PRR7 Antisense RNA 1 2 3 5
  • PRR7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • PRR7-AS1 2 170
  • NONHSAG042357 94
  • NONHSAG042356 94
  • HSALNG0046927 169

External Ids for PRR7-AS1 Gene

Previous GeneCards Identifiers for PRR7-AS1 Gene

  • GC05M176870

Summaries for PRR7-AS1 Gene

GeneCards Summary for PRR7-AS1 Gene

PRR7-AS1 (PRR7 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for PRR7-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for PRR7-AS1 Gene

Genomics for PRR7-AS1 Gene

GeneHancer (GH) Regulatory Elements for PRR7-AS1 Gene

Promoters and enhancers for PRR7-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J177453 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -1.1 -1068 6.9 ZNF785 ZNF24 SP1 ZBTB40 CTCF SREBF1 ZBTB6 MLX RBPJ POLR2A PRR7 PRR7-AS1 PRR7-AS1-001 piR-31966 NSD1 ENSG00000247679 UIMC1 ENSG00000246596 ZNF346 ZNF346-IT1
GH05J177443 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.5 9491 6.2 SIN3A ZNF24 ZBTB6 MLX RBPJ POLR2A NR2F1 NR2F6 ZNF362 MYC PRR7 MXD3 FAM193B LMAN2 NSD1 ZNF346 FAF2 HNRNPAB ENSG00000247679 UIMC1
GH05J177442 Enhancer 0.6 Ensembl dbSUPER 0.4 +13.3 13296 0.2 SP2 POLR2A SP1 F12 GRK6 PFN3 PRR7 PRR7-AS1 NONHSAG042355.2
GH05J177439 Enhancer 0.6 dbSUPER 0.4 +15.0 15048 2.6 POLR2A ZNF280D ZSCAN21 ZNF639 ZNF629 ZEB1 ZBTB17 KLF8 ZFHX2 SUPT5H F12 GRK6 PFN3 MXD3 PRR7 DOK3 NONHSAG042355.2 PRR7-AS1
GH05J177436 Enhancer 0.6 dbSUPER 0.4 +18.4 18404 1.9 NFYC PRDM1 CREB1 SCRT2 NFYB POLR2A SCRT1 USF1 SUPT5H ZNF366 PRR7 NONHSAG042355.2 PRR7-AS1 GRK6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PRR7-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PRR7-AS1 Gene

Genomic Locations for PRR7-AS1 Gene
chr5:177,437,889-177,455,797
(GRCh38/hg38)
Size:
17,909 bases
Orientation:
Minus strand
chr5:176,864,890-176,874,945
(GRCh37/hg19)
Size:
10,056 bases
Orientation:
Minus strand

Genomic View for PRR7-AS1 Gene

Genes around PRR7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PRR7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRR7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PRR7-AS1 Gene

Proteins for PRR7-AS1 Gene

Post-translational modifications for PRR7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PRR7-AS1 Gene

Domains & Families for PRR7-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for PRR7-AS1 Gene

Function for PRR7-AS1 Gene

Phenotypes From GWAS Catalog for PRR7-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PRR7-AS1 Gene

Localization for PRR7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRR7-AS1 Gene

Pathways & Interactions for PRR7-AS1 Gene

PathCards logo

SuperPathways for PRR7-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for PRR7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PRR7-AS1 Gene

Drugs & Compounds for PRR7-AS1 Gene

No Compound Related Data Available

Transcripts for PRR7-AS1 Gene

mRNA/cDNA for PRR7-AS1 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) NONCODE transcripts :
(11) RNACentral transcripts :
(4) LncBook transcripts :
(9) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for PRR7-AS1 Gene

No ASD Table

Relevant External Links for PRR7-AS1 Gene

GeneLoc Exon Structure for
PRR7-AS1
ECgene alternative splicing isoforms for
PRR7-AS1

Expression for PRR7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PRR7-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for PRR7-AS1 Gene

This gene is overexpressed in Whole Blood (x12.8) and Testis (x5.4).

SOURCE GeneReport for Unigene cluster for PRR7-AS1 Gene:

Hs.570879
genes like me logo Genes that share expression patterns with PRR7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRR7-AS1 Gene

Orthologs for PRR7-AS1 Gene

Evolution for PRR7-AS1 Gene

ENSEMBL:
Gene Tree for PRR7-AS1 (if available)
TreeFam:
Gene Tree for PRR7-AS1 (if available)

No data available for Orthologs for PRR7-AS1 Gene

Paralogs for PRR7-AS1 Gene

No data available for Paralogs for PRR7-AS1 Gene

Variants for PRR7-AS1 Gene

Sequence variations from dbSNP and Humsavar for PRR7-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000172509 -- 177,443,432(-) T/C intron_variant
rs1000268936 -- 177,438,403(-) G/A non_coding_transcript_variant
rs1000375801 -- 177,437,511(-) A/G downstream_transcript_variant
rs1000411522 -- 177,446,552(-) T/C intron_variant
rs1000688751 -- 177,439,771(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for PRR7-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv10184n54 CNV loss 21841781
dgv733n27 CNV loss 19166990
nsv1119054 CNV deletion 24896259
nsv1161311 CNV duplication 26073780
nsv1161313 CNV duplication 26073780
nsv471057 CNV loss 18288195
nsv515805 CNV loss 19592680

Additional Variant Information for PRR7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRR7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for PRR7-AS1 Gene

Disorders for PRR7-AS1 Gene

Additional Disease Information for PRR7-AS1

No disorders were found for PRR7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRR7-AS1 Gene

Publications for PRR7-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 56

Products for PRR7-AS1 Gene

Sources for PRR7-AS1 Gene