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PRR35 Gene(Protein Coding)

Proline Rich 35

GCID:
GC16P000559
GIFtS:
30
Genes Participants
UDN Logo

Aliases for PRR35 Gene

Aliases for PRR35 Gene

  • Proline Rich 35 2 3 5
  • C16orf11 3 4
  • Chromosome 16 Open Reading Frame 11 2
  • Uncharacterized Protein RJD1 4
  • Proline-Rich Protein 35 3
  • LA16c-366D1.2 3

External Ids for PRR35 Gene

Previous HGNC Symbols for PRR35 Gene

  • C16orf11

Summaries for PRR35 Gene

GeneCards Summary for PRR35 Gene

PRR35 (Proline Rich 35) is a Protein Coding gene. An important paralog of this gene is ZNF750.

Additional gene information for PRR35 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PRR35 Gene

Genomics for PRR35 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for PRR35 Gene

Promoters and enhancers for PRR35 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16I000560 Promoter 0.7 EPDnew 550.8 0.0 -25 0.1 SUZ12 EZH2 PRR35 GC16P000562
GH16I000562 Enhancer 0.6 FANTOM5 575.5 +1.7 1717 0.2 GMEB1 NFATC1 ZNF600 ZBTB33 ZBTB26 PRR35 GNG13 RGS11 ARHGDIG RHBDL1 GC16P000562 PIGQ NHLRC4
GH16I000523 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13 -32.6 -32631 7.6 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 YY1 CAPN15 LINC00235 GC16M000522 NHLRC4 PRR35 PIGQ ENSG00000261505 ENSG00000260022 AXIN1 ENSG00000260051
GH16I000586 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.6 +30.7 30710 8.4 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 RAB40C GC16M000587 WDR90 ENSG00000261505 ENSG00000260051 WFIKKN1 ENSG00000260954 RHOT2 WASH4P JMJD8
GH16I000533 Enhancer 1.3 Ensembl ENCODE dbSUPER 13.1 -25.5 -25521 3.2 ELF3 CLOCK SREBF2 ZFP64 ARID4B KLF17 DMAP1 ZNF48 RAD21 RARA MIR5587 CAPN15 PRR35 NHLRC4 PIGQ NME4 DECR2 GC16M000522
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PRR35 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PRR35 Gene

Genomic Locations for PRR35 Gene
chr16:560,422-565,529
(GRCh38/hg38)
Size:
5,108 bases
Orientation:
Plus strand
chr16:610,422-615,529
(GRCh37/hg19)

Genomic View for PRR35 Gene

Genes around PRR35 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PRR35 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PRR35 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for PRR35 Gene

Proteins for PRR35 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for PRR35 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CG20-PRR35_HUMAN
    Recommended name:
    Proline-rich protein 35
    Protein Accession:
    P0CG20
    Secondary Accessions:
    • B8ZZ27
    • Q8N233
    • Q96AX3
    • Q96S23

    Protein attributes for PRR35 Gene

    Size:
    571 amino acids
    Molecular mass:
    59354 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAK61234.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for PRR35 Gene

Protein Expression for PRR35 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for PRR35 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PRR35 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PRR35 Gene

Domains & Families for PRR35 Gene

Gene Families for PRR35 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for PRR35 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PRR35: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PRR35 Gene

Function for PRR35 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for PRR35 Gene

genes like me logo Genes that share phenotypes with PRR35: view

Animal Model Products

CRISPR Products

miRNA for PRR35 Gene

miRTarBase miRNAs that target PRR35

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PRR35 Gene

Localization for PRR35 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PRR35 gene
Compartment Confidence
nucleus 2
cytosol 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PRR35 Gene

Pathways & Interactions for PRR35 Gene

SuperPathways for PRR35 Gene

PathCards logo More details on SuperPathways for PRR35
No Data Available

Interacting Proteins for PRR35 Gene

Selected Interacting proteins: P0CG20-PRR35_HUMAN for PRR35 Gene via UniProtKB

Gene Ontology (GO) - Biological Process for PRR35 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PRR35 Gene

Drugs & Compounds for PRR35 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for PRR35 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for PRR35 Gene

(4) REFSEQ mRNAs :
(7) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for PRR35 Gene

No ASD Table

Relevant External Links for PRR35 Gene

GeneLoc Exon Structure for
PRR35
ECgene alternative splicing isoforms for
PRR35

Expression for PRR35 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for PRR35 Gene

mRNA expression in normal human tissues for PRR35 Gene
mRNA expression by GTEx for PRR35 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for PRR35 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for PRR35 Gene



Protein tissue co-expression partners for PRR35 Gene

NURSA nuclear receptor signaling pathways regulating expression of PRR35 Gene:

PRR35
genes like me logo Genes that share expression patterns with PRR35: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PRR35 Gene

Orthologs for PRR35 Gene

This gene was present in the common ancestor of chordates.

Orthologs for PRR35 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia C16H16orf11 33
  • 98.48 (n)
C16orf11 34
  • 97 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia C6H16orf11 33
  • 77.8 (n)
C16orf11 34
  • 70 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia C25H16orf11 33
  • 77.23 (n)
C16orf11 34
  • 67 (a)
 OneToOne
rat
(Rattus norvegicus)
 Mammalia LOC302999 33
  • 74.72 (n)
mouse
(Mus musculus)
 Mammalia A930017K11Rik 34
  • 65 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia C16orf11 34
  • 29 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves C16orf11 34
  • 34 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia C16orf11 34
  • 38 (a)
 OneToOne
African clawed frog
(Xenopus laevis)
 Amphibia Xl.13681 33
zebrafish
(Danio rerio)
 Actinopterygii C24H16orf11 34
  • 25 (a)
 OneToOne
Species where no ortholog for PRR35 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PRR35 Gene

ENSEMBL:
Gene Tree for PRR35 (if available)
TreeFam:
Gene Tree for PRR35 (if available)

Paralogs for PRR35 Gene

Paralogs for PRR35 Gene

Pseudogenes.org Pseudogenes for PRR35 Gene

genes like me logo Genes that share paralogs with PRR35: view

Variants for PRR35 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for PRR35 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000534543 -- 558,398(+) T/C upstream_transcript_variant
rs1000902641 -- 557,937(+) T/G upstream_transcript_variant
rs1001073010 -- 562,539(+) A/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1001145577 -- 562,873(+) T/C intron_variant
rs1001632883 -- 558,345(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for PRR35 Gene

Variant ID Type Subtype PubMed ID
dgv4817n54 CNV gain 21841781
dgv4818n54 CNV loss 21841781
dgv4819n54 CNV gain+loss 21841781
dgv4821n54 CNV gain 21841781
dgv4822n54 CNV loss 21841781
dgv4823n54 CNV loss 21841781
esv2422427 CNV duplication 17116639
esv25069 CNV loss 19812545
nsv1070731 CNV deletion 25765185
nsv1143795 CNV deletion 24896259
nsv1160325 CNV duplication 26073780
nsv457304 CNV gain 19166990
nsv471063 CNV loss 18288195
nsv471064 CNV gain 18288195
nsv526903 CNV loss 19592680
nsv528354 CNV loss 19592680
nsv570988 CNV gain 21841781
nsv571006 CNV gain 21841781
nsv833113 CNV loss 17160897
nsv833114 CNV gain+loss 17160897
nsv952898 CNV deletion 24416366

Variation tolerance for PRR35 Gene

Gene Damage Index Score: 3.92; 59.48% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for PRR35 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PRR35

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PRR35 Gene

Disorders for PRR35 Gene

Additional Disease Information for PRR35

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for PRR35 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PRR35 Gene

Publications for PRR35 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16. (PMID: 11157797) Daniels RJ … Higgs DR (Human molecular genetics 2001) 4 58
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for PRR35 Gene

Sources for PRR35 Gene

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